PhenoGMM: Gaussian mixture modeling of cytometry data quantifies changes in microbial community structure
Microbial flow cytometry can rapidly characterize the status of microbial communities. Upon
measurement, large amounts of quantitative single-cell data are generated, which need to …
measurement, large amounts of quantitative single-cell data are generated, which need to …
Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting
J Heyse, F Schattenberg, P Rubbens, S Müller… - Msystems, 2021 - Am Soc Microbiol
Microbiome management research and applications rely on temporally resolved
measurements of community composition. Current technologies to assess community …
measurements of community composition. Current technologies to assess community …
flowEMMi: an automated model-based clustering tool for microbial cytometric data
Background Flow cytometry (FCM) is a powerful single-cell based measurement method to
ascertain multidimensional optical properties of millions of cells. FCM is widely used in …
ascertain multidimensional optical properties of millions of cells. FCM is widely used in …
Application of flow cytometry for rapid, high-throughput, multiparametric analysis of environmental microbiomes
Quantification of the abundance and understanding of the dynamics of the microbial
communities is essential to establish a basis for microbiome characterization. The …
communities is essential to establish a basis for microbiome characterization. The …
Computational analysis of microbial flow cytometry data
Flow cytometry is an important technology for the study of microbial communities. It grants
the ability to rapidly generate phenotypic single-cell data that are both quantitative …
the ability to rapidly generate phenotypic single-cell data that are both quantitative …
Development of an automated online flow cytometry method to quantify cell density and fingerprint bacterial communities
J López-Gálvez, K Schiessl, MD Besmer, C Bruckmann… - Cells, 2023 - mdpi.com
Cell density is an important factor in all microbiome research, where interactions are of
interest. It is also the most important parameter for the operation and control of most …
interest. It is also the most important parameter for the operation and control of most …
Bacterial mock communities as standards for reproducible cytometric microbiome analysis
N Cichocki, T Hübschmann, F Schattenberg… - Nature …, 2020 - nature.com
Flow cytometry has recently established itself as a tool to track short-term dynamics in
microbial community assembly and link those dynamics with ecological parameters …
microbial community assembly and link those dynamics with ecological parameters …
Measuring the biodiversity of microbial communities by flow cytometry
Measuring the microbial diversity in natural and engineered environments is important for
ecosystem characterization, ecosystem monitoring and hypothesis testing. Although the …
ecosystem characterization, ecosystem monitoring and hypothesis testing. Although the …
Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics
C Koch, F Harnisch, U Schröder, S Müller - Frontiers in microbiology, 2014 - frontiersin.org
Optical characteristics of individual bacterial cells of natural communities can be measured
with flow cytometry (FCM) in high throughput. The resulting data are visualized in cytometric …
with flow cytometry (FCM) in high throughput. The resulting data are visualized in cytometric …
CHIC—an automated approach for the detection of dynamic variations in complex microbial communities
Altering environmental conditions change structures of microbial communities. These effects
have an impact on the single‐cell level and can be sensitively detected using community …
have an impact on the single‐cell level and can be sensitively detected using community …