Measuring enzyme activities under standardized in vivo‐like conditions for systems biology
Realistic quantitative models require data from many laboratories. Therefore,
standardization of experimental systems and assay conditions is crucial. Moreover …
standardization of experimental systems and assay conditions is crucial. Moreover …
Regulation of fermentative capacity and levels of glycolytic enzymes in chemostat cultures of Saccharomyces cerevisiae
P van Hoek, JP van Dijken, JT Pronk - Enzyme and microbial technology, 2000 - Elsevier
Regulation of fermentative capacity was studied in chemostat cultures of two
Saccharomyces cerevisiae strains: the laboratory strain CEN. PK113-7D and the industrial …
Saccharomyces cerevisiae strains: the laboratory strain CEN. PK113-7D and the industrial …
Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics
K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …
showed that one of the most studied biochemical pathways could not be quite understood in …
An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains
JP Van Dijken, J Bauer, L Brambilla, P Duboc… - Enzyme and microbial …, 2000 - Elsevier
To select a Saccharomyces cerevisiae reference strain amenable to experimental
techniques used in (molecular) genetic, physiological and biochemical engineering …
techniques used in (molecular) genetic, physiological and biochemical engineering …
[HTML][HTML] The importance and challenges of in vivo-like enzyme kinetics
K van Eunen, BM Bakker - Perspectives in Science, 2014 - Elsevier
Realistic mathematical models of biochemical pathways require kinetic data that have been
measured under physiological conditions. However, until recently most enzyme-kinetic data …
measured under physiological conditions. However, until recently most enzyme-kinetic data …
Growth and metabolism of Saccharomyces cerevisiae in chemostat cultures under carbon-, nitrogen-, or carbon-and nitrogen-limiting conditions
C Larsson, U von Stockar, I Marison… - Journal of …, 1993 - Am Soc Microbiol
Aerobic chemostat cultures of Saccharomyces cerevisiae were performed under carbon-,
nitrogen-, and dual carbon-and nitrogen-limiting conditions. The glucose concentration was …
nitrogen-, and dual carbon-and nitrogen-limiting conditions. The glucose concentration was …
Prediction of enzyme kinetic parameters based on statistical learning
S Borger, W Liebermeister, E Klipp - Genome Informatics, 2006 - jstage.jst.go.jp
Values of enzyme kinetic parameters are a key requisite for the kinetic modelling of
biochemical systems. For most kinetic parameters, however, not even an order of magnitude …
biochemical systems. For most kinetic parameters, however, not even an order of magnitude …
Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
AB Canelas, N Harrison, A Fazio, J Zhang… - Nature …, 2010 - nature.com
The field of systems biology is often held back by difficulties in obtaining comprehensive,
high-quality, quantitative data sets. In this paper, we undertook an interlaboratory effort to …
high-quality, quantitative data sets. In this paper, we undertook an interlaboratory effort to …
Physiology of the yeast Kluyveromyces marxianus during batch and chemostat cultures with glucose as the sole carbon source
Growth, substrate consumption, metabolite formation, biomass composition and respiratory
parameters of Kluyveromyces marxianus ATCC 26548 were determined during aerobic …
parameters of Kluyveromyces marxianus ATCC 26548 were determined during aerobic …
Improved rapid sampling for in vivo kinetics of intracellular metabolites in Saccharomyces cerevisiae
HC Lange, M Eman, G Van Zuijlen… - Biotechnology and …, 2001 - Wiley Online Library
An integrated approach is used to develop a rapid sampling strategy for the quantitative
analysis of in vivo kinetic behavior based on measured concentrations of intracellular …
analysis of in vivo kinetic behavior based on measured concentrations of intracellular …