Measuring enzyme activities under standardized in vivo‐like conditions for systems biology

K Van Eunen, J Bouwman, P Daran‐Lapujade… - The FEBS …, 2010 - Wiley Online Library
Realistic quantitative models require data from many laboratories. Therefore,
standardization of experimental systems and assay conditions is crucial. Moreover …

Regulation of fermentative capacity and levels of glycolytic enzymes in chemostat cultures of Saccharomyces cerevisiae

P van Hoek, JP van Dijken, JT Pronk - Enzyme and microbial technology, 2000 - Elsevier
Regulation of fermentative capacity was studied in chemostat cultures of two
Saccharomyces cerevisiae strains: the laboratory strain CEN. PK113-7D and the industrial …

Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics

K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …

An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains

JP Van Dijken, J Bauer, L Brambilla, P Duboc… - Enzyme and microbial …, 2000 - Elsevier
To select a Saccharomyces cerevisiae reference strain amenable to experimental
techniques used in (molecular) genetic, physiological and biochemical engineering …

[HTML][HTML] The importance and challenges of in vivo-like enzyme kinetics

K van Eunen, BM Bakker - Perspectives in Science, 2014 - Elsevier
Realistic mathematical models of biochemical pathways require kinetic data that have been
measured under physiological conditions. However, until recently most enzyme-kinetic data …

Growth and metabolism of Saccharomyces cerevisiae in chemostat cultures under carbon-, nitrogen-, or carbon-and nitrogen-limiting conditions

C Larsson, U von Stockar, I Marison… - Journal of …, 1993 - Am Soc Microbiol
Aerobic chemostat cultures of Saccharomyces cerevisiae were performed under carbon-,
nitrogen-, and dual carbon-and nitrogen-limiting conditions. The glucose concentration was …

Prediction of enzyme kinetic parameters based on statistical learning

S Borger, W Liebermeister, E Klipp - Genome Informatics, 2006 - jstage.jst.go.jp
Values of enzyme kinetic parameters are a key requisite for the kinetic modelling of
biochemical systems. For most kinetic parameters, however, not even an order of magnitude …

Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains

AB Canelas, N Harrison, A Fazio, J Zhang… - Nature …, 2010 - nature.com
The field of systems biology is often held back by difficulties in obtaining comprehensive,
high-quality, quantitative data sets. In this paper, we undertook an interlaboratory effort to …

Physiology of the yeast Kluyveromyces marxianus during batch and chemostat cultures with glucose as the sole carbon source

GG Fonseca, AK Gombert, E Heinzle… - FEMS yeast …, 2007 - academic.oup.com
Growth, substrate consumption, metabolite formation, biomass composition and respiratory
parameters of Kluyveromyces marxianus ATCC 26548 were determined during aerobic …

Improved rapid sampling for in vivo kinetics of intracellular metabolites in Saccharomyces cerevisiae

HC Lange, M Eman, G Van Zuijlen… - Biotechnology and …, 2001 - Wiley Online Library
An integrated approach is used to develop a rapid sampling strategy for the quantitative
analysis of in vivo kinetic behavior based on measured concentrations of intracellular …