Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription

H Kilpinen, SM Waszak, AR Gschwind, SK Raghav… - Science, 2013 - science.org
DNA sequence variation has been associated with quantitative changes in molecular
phenotypes such as gene expression, but its impact on chromatin states is poorly …

Heritable individual-specific and allele-specific chromatin signatures in humans

R McDaniell, BK Lee, L Song, Z Liu, AP Boyle… - Science, 2010 - science.org
The extent to which variation in chromatin structure and transcription factor binding may
influence gene expression, and thus underlie or contribute to variation in phenotype, is …

Extensive variation in chromatin states across humans

M Kasowski, S Kyriazopoulou-Panagiotopoulou… - Science, 2013 - science.org
The majority of disease-associated variants lie outside protein-coding regions, suggesting a
link between variation in regulatory regions and disease predisposition. We studied …

Cis-acting regulatory variation in the human genome

T Pastinen, TJ Hudson - Science, 2004 - science.org
The systematic screening of the human genome for genetic variants that affect gene
regulation should advance our fundamental understanding of phenotypic diversity and lead …

Chromatin three-dimensional interactions mediate genetic effects on gene expression

O Delaneau, M Zazhytska, C Borel, G Giannuzzi, G Rey… - Science, 2019 - science.org
INTRODUCTION Genome-wide studies on the genetic basis of gene expression have
advanced considerably our understanding of the function of the human genome. Large …

Molecular basis and biological function of variability in spatial genome organization

EH Finn, T Misteli - Science, 2019 - science.org
BACKGROUND The eukaryotic genome is hierarchically organized in the cell nucleus into
DNA loops, chromatin domains, compartments, and, ultimately, chromosomes. Many of the …

Identification of genetic variants that affect histone modifications in human cells

G McVicker, B Van De Geijn, JF Degner, CE Cain… - Science, 2013 - science.org
Histone modifications are important markers of function and chromatin state, yet the DNA
sequence elements that direct them to specific genomic locations are poorly understood …

Common regulatory variation impacts gene expression in a cell type–dependent manner

AS Dimas, S Deutsch, BE Stranger, SB Montgomery… - Science, 2009 - science.org
Studies correlating genetic variation to gene expression facilitate the interpretation of
common human phenotypes and disease. As functional variants may be operating in a …

Whole-genome patterns of common DNA variation in three human populations

DA Hinds, LL Stuve, GB Nilsen, E Halperin, E Eskin… - Science, 2005 - science.org
Individual differences in DNA sequence are the genetic basis of human variability. We have
characterized whole-genome patterns of common human DNA variation by genotyping …

Genome-wide allele-specific analysis: insights into regulatory variation

T Pastinen - Nature Reviews Genetics, 2010 - nature.com
Functional genomics is rapidly progressing towards the elucidation of elements that are
crucial for the cis-regulatory control of gene expression, and population-based studies of …