High throughput shotgun sequencing of eRNA reveals taxonomic and derived functional shifts across a benthic productivity gradient
Benthic macrofauna is regularly used in monitoring programmes, however the vast majority
of benthic eukaryotic biodiversity lies mostly in microscopic organisms, such as meiofauna …
of benthic eukaryotic biodiversity lies mostly in microscopic organisms, such as meiofauna …
Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing
Understanding how biodiversity changes in time and space is vital to assess the effects of
environmental change on benthic ecosystems. Due to the limitations of morphological …
environmental change on benthic ecosystems. Due to the limitations of morphological …
High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems
Environmental diversity surveys are crucial for the bioassessment of anthropogenic impacts
on marine ecosystems. Traditional benthic monitoring relying on morphotaxonomic …
on marine ecosystems. Traditional benthic monitoring relying on morphotaxonomic …
Environmental monitoring through protist next‐generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities
The measurement of species diversity represents a powerful tool for assessing the impacts
of human activities on marine ecosystems. Traditionally, the impact of fish farming on the …
of human activities on marine ecosystems. Traditionally, the impact of fish farming on the …
Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic …
Sequencing environmental DNA (eDNA) is increasingly being used as an alternative to
traditional morphological-based identification to characterize biological assemblages and …
traditional morphological-based identification to characterize biological assemblages and …
Predicting the ecological quality status of marine environments from eDNA metabarcoding data using supervised machine learning
Monitoring biodiversity is essential to assess the impacts of increasing anthropogenic
activities in marine environments. Traditionally, marine biomonitoring involves the sorting …
activities in marine environments. Traditionally, marine biomonitoring involves the sorting …
[HTML][HTML] An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities
The abyssal seafloor covers more than 50% of planet Earth and is a large reservoir of still
mostly undescribed biodiversity. It is increasingly targeted by resource-extraction industries …
mostly undescribed biodiversity. It is increasingly targeted by resource-extraction industries …
[HTML][HTML] Eukaryotic biodiversity and spatial patterns in the Clarion-Clipperton Zone and other abyssal regions: Insights from sediment DNA and RNA metabarcoding
F Lejzerowicz, AJ Gooday… - Frontiers in Marine …, 2021 - frontiersin.org
The abyssal seafloor is a mosaic of highly diverse habitats that represent the least known
marine ecosystems on Earth. Some regions enriched in natural resources, such as …
marine ecosystems on Earth. Some regions enriched in natural resources, such as …
RNA outperforms DNA-based metabarcoding in assessing the diversity and response of microeukaryotes to environmental variables in the Arctic Ocean
Abstract The Arctic Ocean (AO) has a harsh environment characterized by low temperatures,
extensive ice coverage, and periodic freezing and melting of sea ice, which has provided …
extensive ice coverage, and periodic freezing and melting of sea ice, which has provided …
Assessing the degradation of environmental DNA and RNA based on genomic origin in a metabarcoding context
Molecular tools of species identification based on eNAs (environmental nucleic acids;
environmental DNA [eDNA] and environmental RNA [eRNA]) have the potential to greatly …
environmental DNA [eDNA] and environmental RNA [eRNA]) have the potential to greatly …