The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

GTEx Consortium, KG Ardlie, DS Deluca, AV Segrè… - Science, 2015 - science.org
Understanding the functional consequences of genetic variation, and how it affects complex
human disease and quantitative traits, remains a critical challenge for biomedicine. We …

Common regulatory variation impacts gene expression in a cell type–dependent manner

AS Dimas, S Deutsch, BE Stranger, SB Montgomery… - Science, 2009 - science.org
Studies correlating genetic variation to gene expression facilitate the interpretation of
common human phenotypes and disease. As functional variants may be operating in a …

The GTEx Consortium atlas of genetic regulatory effects across human tissues

GTEx Consortium - Science, 2020 - science.org
The Genotype-Tissue Expression (GTEx) project was established to characterize genetic
effects on the transcriptome across human tissues and to link these regulatory mechanisms …

Using an atlas of gene regulation across 44 human tissues to inform complex disease-and trait-associated variation

ER Gamazon, AV Segrè, M Van De Bunt, X Wen… - Nature …, 2018 - nature.com
We apply integrative approaches to expression quantitative loci (eQTLs) from 44 tissues
from the Genotype-Tissue Expression project and genome-wide association study data …

Genetic effects on gene expression across human tissues

GTEx Consortium Lead analysts: Aguet François 1 … - Nature, 2017 - nature.com
Abstract Characterization of the molecular function of the human genome and its variation
across individuals is essential for identifying the cellular mechanisms that underlie human …

Dynamic genetic regulation of gene expression during cellular differentiation

BJ Strober, R Elorbany, K Rhodes, N Krishnan… - Science, 2019 - science.org
Genetic regulation of gene expression is dynamic, as transcription can change during cell
differentiation and across cell types. We mapped expression quantitative trait loci (eQTLs) …

Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease

Nature genetics, 2017 - nature.com
Genetic variants have been associated with myriad molecular phenotypes that provide new
insight into the range of mechanisms underlying genetic traits and diseases. Identifying any …

Redefining tissue specificity of genetic regulation of gene expression in the presence of allelic heterogeneity

M Arvanitis, K Tayeb, BJ Strober, A Battle - The American Journal of …, 2022 - cell.com
Uncovering the functional impact of genetic variation on gene expression is important in
understanding tissue biology and the pathogenesis of complex traits. Despite large efforts to …

Multiple causal variants underlie genetic associations in humans

NS Abell, MK DeGorter, MJ Gloudemans, E Greenwald… - Science, 2022 - science.org
Associations between genetic variation and traits are often in noncoding regions with strong
linkage disequilibrium (LD), where a single causal variant is assumed to underlie the …

Tensor decomposition for multiple-tissue gene expression experiments

V Hore, A Vinuela, A Buil, J Knight, MI McCarthy… - Nature …, 2016 - nature.com
Genome-wide association studies of gene expression traits and other cellular phenotypes
have successfully identified links between genetic variation and biological processes. The …