[PDF][PDF] DockThor 2.0: a free web server for protein-ligand virtual screening
INTRODUCTION. Receptor-ligand molecular docking is a structure-based approach widely
used by the scientific community in Medicinal Chemistry. The main objective is to assist the …
used by the scientific community in Medicinal Chemistry. The main objective is to assist the …
Consensus docking in drug discovery
G Poli, T Tuccinardi - Current Bioactive Compounds, 2020 - ingentaconnect.com
Background: Molecular docking is probably the most popular and profitable approach in
computer-aided drug design, being the staple technique for predicting the binding mode of …
computer-aided drug design, being the staple technique for predicting the binding mode of …
DockThor-VS: A Free Platform for Receptor-Ligand Virtual Screening
IA Guedes, MMP da Silva, M Galheigo… - Journal of Molecular …, 2024 - Elsevier
The DockThor-VS platform (https://dockthor. lncc. br/v2/) is a free protein–ligand docking
server conceptualized to facilitate and assist drug discovery projects to perform docking …
server conceptualized to facilitate and assist drug discovery projects to perform docking …
BEAR, a molecular docking refinement and rescoring method
A Anighoro, G Rastelli - Computational Molecular Bioscience, 2013 - iris.unimore.it
Abstract BEAR (Binding Estimation After Refinement) is a computational method for structure-
based virtual screening. It was set up as a post-docking processing tool for the refinement of …
based virtual screening. It was set up as a post-docking processing tool for the refinement of …
Nonlinear scoring functions for similarity-based ligand docking and binding affinity prediction
M Brylinski - 2013 - ACS Publications
A common strategy for virtual screening considers a systematic docking of a large library of
organic compounds into the target sites in protein receptors with promising leads selected …
organic compounds into the target sites in protein receptors with promising leads selected …
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
D Plewczynski, M Łaźniewski… - Journal of …, 2011 - Wiley Online Library
Docking is one of the most commonly used techniques in drug design. It is used for both
identifying correct poses of a ligand in the binding site of a protein as well as for the …
identifying correct poses of a ligand in the binding site of a protein as well as for the …
Protein-ligand docking in drug design: performance assessment and binding-pose selection
F Ballante - Rational drug design: methods and protocols, 2018 - Springer
Main goal in drug discovery is the identification of drug-like compounds capable to modulate
specific biological targets. Thus, the prediction of reliable binding poses of candidate …
specific biological targets. Thus, the prediction of reliable binding poses of candidate …
Extensive consensus docking evaluation for ligand pose prediction and virtual screening studies
T Tuccinardi, G Poli, V Romboli… - Journal of Chemical …, 2014 - ACS Publications
Molecular docking strategies are one of the most widely used techniques for predicting the
binding mode of a ligand and for obtaining new hits in virtual screening studies. In order to …
binding mode of a ligand and for obtaining new hits in virtual screening studies. In order to …
Calculating an optimal box size for ligand docking and virtual screening against experimental and predicted binding pockets
WP Feinstein, M Brylinski - Journal of cheminformatics, 2015 - Springer
Background Computational approaches have emerged as an instrumental methodology in
modern research. For example, virtual screening by molecular docking is routinely used in …
modern research. For example, virtual screening by molecular docking is routinely used in …
Cosolvent-based protein pharmacophore for ligand enrichment in virtual screening
Virtual screening of large compound databases, looking for potential ligands of a target
protein, is a major tool in computer-aided drug discovery. Throughout the years, different …
protein, is a major tool in computer-aided drug discovery. Throughout the years, different …