[HTML][HTML] DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking
I Tuszynska, JM Bujnicki - BMC bioinformatics, 2011 - Springer
Background Protein-RNA interactions play fundamental roles in many biological processes.
Understanding the molecular mechanism of protein-RNA recognition and formation of …
Understanding the molecular mechanism of protein-RNA recognition and formation of …
Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials
L Pérez-Cano, A Solernou, C Pons… - Biocomputing …, 2010 - World Scientific
Despite the importance of protein-RNA interactions in the cellular context, the number of
available protein-RNA complex structures is still much lower than those of other …
available protein-RNA complex structures is still much lower than those of other …
A non‐redundant protein–RNA docking benchmark version 2.0
C Nithin, S Mukherjee… - … : Structure, Function, and …, 2017 - Wiley Online Library
We present an updated version of the protein–RNA docking benchmark, which we first
published four years back. The non‐redundant protein–RNA docking benchmark version 2.0 …
published four years back. The non‐redundant protein–RNA docking benchmark version 2.0 …
A nonredundant structure dataset for benchmarking protein‐RNA computational docking
SY Huang, X Zou - Journal of computational chemistry, 2013 - Wiley Online Library
Protein–RNA interactions play an important role in many biological processes. The ability to
predict the molecular structures of protein–RNA complexes from docking would be valuable …
predict the molecular structures of protein–RNA complexes from docking would be valuable …
A protein‐RNA docking benchmark (II): Extended set from experimental and homology modeling data
L Pérez‐Cano, B Jiménez‐García… - Proteins: Structure …, 2012 - Wiley Online Library
We present here an extended protein–RNA docking benchmark composed of 71 test cases
in which the coordinates of the interacting protein and RNA molecules are available from …
in which the coordinates of the interacting protein and RNA molecules are available from …
[HTML][HTML] Protein-RNA complexes and efficient automatic docking: expanding RosettaDock possibilities
A Guilhot-Gaudeffroy, C Froidevaux, J Azé, J Bernauer - PloS one, 2014 - journals.plos.org
Protein-RNA complexes provide a wide range of essential functions in the cell. Their atomic
experimental structure solving, despite essential to the understanding of these functions, is …
experimental structure solving, despite essential to the understanding of these functions, is …
[HTML][HTML] Bioinformatics tools and benchmarks for computational docking and 3D structure prediction of RNA-protein complexes
RNA-protein (RNP) interactions play essential roles in many biological processes, such as
regulation of co-transcriptional and post-transcriptional gene expression, RNA splicing …
regulation of co-transcriptional and post-transcriptional gene expression, RNA splicing …
[HTML][HTML] Template-based modeling of protein-RNA interactions
Protein-RNA complexes formed by specific recognition between RNA and RNA-binding
proteins play an important role in biological processes. More than a thousand of such …
proteins play an important role in biological processes. More than a thousand of such …
Computational methods for prediction of protein–RNA interactions
T Puton, L Kozlowski, I Tuszynska, K Rother… - Journal of structural …, 2012 - Elsevier
Understanding the molecular mechanism of protein–RNA recognition and complex
formation is a major challenge in structural biology. Unfortunately, the experimental …
formation is a major challenge in structural biology. Unfortunately, the experimental …
NPDock: a web server for protein–nucleic acid docking
Protein–RNA and protein–DNA interactions play fundamental roles in many biological
processes. A detailed understanding of these interactions requires knowledge about protein …
processes. A detailed understanding of these interactions requires knowledge about protein …
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