Homoeolog expression bias and expression level dominance in allopolyploids

CE Grover, JP Gallagher, EP Szadkowski, MJ Yoo… - New Phytologist, 2012 - JSTOR
Polyploidy is now recognized as a characteristic feature of all angiosperm genomes (Jiao et
al., 2011), and remains an important speciation process today (Wendel, 2000; Comai, 2005; …

Cistrans controls and regulatory novelty accompanying allopolyploidization

G Hu, JF Wendel - New Phytologist, 2019 - Wiley Online Library
Allopolyploidy is a prevalent process in plants, having important physiological, ecological
and evolutionary consequences. Transcriptomic responses to genomic merger and doubling …

The causes and consequences of subgenome dominance in hybrids and recent polyploids

KA Bird, R VanBuren, JR Puzey, PP Edger - New Phytologist, 2018 - Wiley Online Library
Contents Summary 87 I. Introduction 87 II. Evolution in action: subgenome dominance within
newly formed hybrids and polyploids 88 III. Summary and future directions 90 …

Tissue‐specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus

RJA Buggs, NM Elliott, L Zhang, J Koh… - New …, 2010 - Wiley Online Library
Recent years have seen rapid advances in our knowledge of the transcriptomic
consequences of allopolyploidy, primarily through the study of polyploid crops and model …

Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

Homoeologous exchanges cause extensive dosage‐dependent gene expression changes in an allopolyploid crop

A Lloyd, A Blary, D Charif, C Charpentier… - New …, 2018 - Wiley Online Library
Structural variation is a major source of genetic diversity and an important substrate for
selection. In allopolyploids, homoeologous exchanges (ie between the constituent …

Evolutionary consequences of autopolyploidy

C Parisod, R Holderegger, C Brochmann - New phytologist, 2010 - Wiley Online Library
Autopolyploidy is more common in plants than traditionally assumed, but has received little
attention compared with allopolyploidy. Hence, the advantages and disadvantages of …

Impact of transposable elements on the organization and function of allopolyploid genomes

C Parisod, K Alix, J Just, M Petit, V Sarilar… - New …, 2010 - Wiley Online Library
Transposable elements (TEs) represent an important fraction of plant genomes and are
likely to play a pivotal role in fuelling genome reorganization and functional changes …

Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayrose et al. (2011)

DE Soltis, MC Segovia-Salcedo, I Jordon-Thaden… - New Phytologist, 2014 - JSTOR
Background Throughout the past century, hybridization and polyploidization have variously
been viewed as drivers of biodiversity (eg Arnold, 1997) or evolutionary noise, unimportant …

Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature

A Bardil, JD de Almeida, MC Combes… - New …, 2011 - Wiley Online Library
Polyploidy occurs throughout the evolutionary history of many plants and considerably
impacts species diversity, giving rise to novel phenotypes and leading to ecological …