[HTML][HTML] Next-generation sequencing reveals genomic features in the Japanese quail

R Kawahara-Miki, S Sano, M Nunome, T Shimmura… - Genomics, 2013 - Elsevier
The Japanese quail has several advantages as a laboratory animal for biological and
biomedical investigations. In this study, the draft genome of the Japanese quail was …

Population genomic data reveal genes related to important traits of quail

Y Wu, Y Zhang, Z Hou, G Fan, J Pi, S Sun, J Chen… - …, 2018 - academic.oup.com
Abstract Background Japanese quail (Coturnix japonica), a recently domesticated poultry
species, is important not only as an agricultural product, but also as a model bird species for …

[HTML][HTML] Genome diversity of Chinese indigenous chicken and the selective signatures in Chinese gamecock chicken

W Luo, C Luo, M Wang, L Guo, X Chen, Z Li… - Scientific Reports, 2020 - nature.com
Gamecock chickens are one of the earliest recorded birds in China, and have accumulated
some unique morphological and behavioral signatures such as large body size, muscularity …

Genomic data for 78 chickens from 14 populations

D Li, T Che, B Chen, S Tian, X Zhou, G Zhang… - …, 2017 - academic.oup.com
Background: Since the domestication of the red jungle fowls (Gallus gallus; dating back to∼
10 000 BP) in Asia, domestic chickens (Gallus gallus domesticus) have been subjected to …

[HTML][HTML] Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

R Kawahara-Miki, K Tsuda, Y Shiwa, Y Arai-Kichise… - BMC genomics, 2011 - Springer
Abstract Background Because the Japanese native cattle Kuchinoshima-Ushi have been
isolated in a small island and their lineage has been intensely protected, it has been …

[HTML][HTML] Genotyping-by-Sequencing Strategy for Integrating Genomic Structure, Diversity and Performance of Various Japanese Quail (Coturnix japonica) Breeds

NA Volkova, MN Romanov, AS Abdelmanova… - Animals, 2023 - mdpi.com
Simple Summary Artificial selection has been applied to domesticated birds for many
decades. More recently, this selection has made use of so-called single-nucleotide …

The chicken model organism for epigenomic research

TH Beacon, JR Davie - Genome, 2021 - cdnsciencepub.com
The chicken model organism has advanced the areas of developmental biology, virology,
immunology, oncology, epigenetic regulation of gene expression, conservation biology, and …

[HTML][HTML] Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

DK Griffin, LB Robertson, HG Tempest, A Vignal… - BMC genomics, 2008 - Springer
Background Comparative genomics is a powerful means of establishing inter-specific
relationships between gene function/location and allows insight into genomic …

[PDF][PDF] De novo assembly of 20 chicken genomes reveals the undetectable phenomenon for thousands of core genes on microchromosomes and subtelomeric regions

M Li, C Sun, N Xu, P Bian, X Tian… - Molecular Biology …, 2022 - academic.oup.com
The gene numbers and evolutionary rates of birds were assumed to be much lower than
those of mammals, which is in sharp contrast to the huge species number and …

[HTML][HTML] Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution

B Wang, R Ekblom, I Bunikis, H Siitari, J Höglund - BMC genomics, 2014 - Springer
Background The different regions of a genome do not evolve at the same rate. For example,
comparative genomic studies have suggested that the sex chromosomes and the regions …