RMDisease V2. 0: an updated database of genetic variants that affect RNA modifications with disease and trait implication

B Song, X Wang, Z Liang, J Ma, D Huang… - Nucleic Acids …, 2023 - academic.oup.com
Recent advances in epitranscriptomics have unveiled functional associations between RNA
modifications (RMs) and multiple human diseases, but distinguishing the functional or …

RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis

K Chen, B Song, Y Tang, Z Wei, Q Xu, J Su… - Nucleic acids …, 2021 - academic.oup.com
Deciphering the biological impacts of millions of single nucleotide variants remains a major
challenge. Recent studies suggest that RNA modifications play versatile roles in essential …

RMVar: an updated database of functional variants involved in RNA modifications

X Luo, H Li, J Liang, Q Zhao, Y Xie, J Ren… - Nucleic acids …, 2021 - academic.oup.com
Distinguishing the few disease-related variants from a massive number of passenger
variants is a major challenge. Variants affecting RNA modifications that play critical roles in …

RMBase v2. 0: deciphering the map of RNA modifications from epitranscriptome sequencing data

JJ Xuan, WJ Sun, PH Lin, KR Zhou, S Liu… - Nucleic acids …, 2018 - academic.oup.com
More than 100 distinct chemical modifications to RNA have been characterized so far.
However, the prevalence, mechanisms and functions of various RNA modifications remain …

A mark of disease: how mRNA modifications shape genetic and acquired pathologies

E Destefanis, G Avşar, P Groza, A Romitelli, S Torrini… - Rna, 2021 - rnajournal.cshlp.org
RNA modifications have recently emerged as a widespread and complex facet of gene
expression regulation. Counting more than 170 distinct chemical modifications with far …

[HTML][HTML] A census and categorization method of epitranscriptomic marks

J Mathlin, L Le Pera, T Colombo - International Journal of Molecular …, 2020 - mdpi.com
In the past few years, thorough investigation of chemical modifications operated in the cells
on ribonucleic acid (RNA) molecules is gaining momentum. This new field of research has …

Epitranscriptomic code and its alterations in human disease

RV Kadumuri, SC Janga - Trends in Molecular Medicine, 2018 - cell.com
Innovations in epitranscriptomics have resulted in the identification of more than 160 RNA
modifications to date. These developments, together with the recent discovery of writers …

RMBase v3. 0: decode the landscape, mechanisms and functions of RNA modifications

J Xuan, L Chen, Z Chen, J Pang, J Huang… - Nucleic Acids …, 2024 - academic.oup.com
Although over 170 chemical modifications have been identified, their prevalence,
mechanism and function remain largely unknown. To enable integrated analysis of diverse …

RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications

X Bao, Y Zhang, H Li, Y Teng, L Ma… - Nucleic Acids …, 2023 - academic.oup.com
RNA modification is a dynamic and reversible process regulated by a series of writers,
erasers and readers (WERs). Abnormal changes of WERs will disrupt the RNA modification …

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology

Y Zhang, J Jiang, J Ma, Z Wei, Y Wang… - Nucleic Acids …, 2023 - academic.oup.com
With advanced technologies to map RNA modifications, our understanding of them has
been revolutionized, and they are seen to be far more widespread and important than …