Variability in a Short Tandem Repeat Mediates Complex Epistatic Interactions in Arabidopsis thaliana
MO Press, C Queitsch - Genetics, 2017 - academic.oup.com
Short tandem repeats (STRs) are hypervariable genetic elements that occur frequently in
coding regions. Their high mutation rate readily generates genetic variation, contributing to …
coding regions. Their high mutation rate readily generates genetic variation, contributing to …
Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3
Tandem repeats (TRs) have extremely high mutation rates and are often considered to be
neutrally evolving DNA. However, in coding regions, TR copy number mutations can …
neutrally evolving DNA. However, in coding regions, TR copy number mutations can …
Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
Short tandem repeat (STR) mutations may comprise more than half of the mutations in
eukaryotic coding DNA, yet STR variation is rarely examined as a contributor to complex …
eukaryotic coding DNA, yet STR variation is rarely examined as a contributor to complex …
Length variation in short tandem repeats affects gene expression in natural populations of Arabidopsis thaliana
The genetic basis for the fine-tuned regulation of gene expression is complex and ultimately
influences the phenotype and thus the local adaptation of natural populations. Short tandem …
influences the phenotype and thus the local adaptation of natural populations. Short tandem …
Genetic architecture of regulatory variation in Arabidopsis thaliana
Studying the genetic regulation of expression variation is a key method to dissect complex
phenotypic traits. To examine the genetic architecture of regulatory variation in Arabidopsis …
phenotypic traits. To examine the genetic architecture of regulatory variation in Arabidopsis …
Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana
CM Alexandre, JR Urton, K Jean-Baptiste… - Molecular Biology …, 2018 - academic.oup.com
Variation in regulatory DNA is thought to drive phenotypic variation, evolution, and disease.
Prior studies of regulatory DNA and transcription factors across animal species highlighted a …
Prior studies of regulatory DNA and transcription factors across animal species highlighted a …
Inheritance Beyond Plain Heritability: Variance-Controlling Genes in Arabidopsis thaliana
The phenotypic effect of a gene is normally described by the mean-difference between
alternative genotypes. A gene may, however, also influence the phenotype by causing a …
alternative genotypes. A gene may, however, also influence the phenotype by causing a …
A Polynucleotide Repeat Expansion Causing Temperature-Sensitivity Persists in Wild Irish Accessions of Arabidopsis thaliana
A Tabib, S Vishwanathan, A Seleznev… - Frontiers in Plant …, 2016 - frontiersin.org
Triplet repeat expansions underlie several human genetic diseases such as Huntington's
disease and Friedreich's ataxia. Although such mutations are primarily known from humans …
disease and Friedreich's ataxia. Although such mutations are primarily known from humans …
A Genome-Wide Association Analysis Reveals Epistatic Cancellation of Additive Genetic Variance for Root Length in Arabidopsis thaliana
Efforts to identify loci underlying complex traits generally assume that most genetic variance
is additive. Here, we examined the genetics of Arabidopsis thaliana root length and found …
is additive. Here, we examined the genetics of Arabidopsis thaliana root length and found …
Inferring short tandem repeat variation from paired-end short reads
MD Cao, E Tasker, K Willadsen, M Imelfort… - Nucleic acids …, 2014 - academic.oup.com
The advances of high-throughput sequencing offer an unprecedented opportunity to study
genetic variation. This is challenged by the difficulty of resolving variant calls in repetitive …
genetic variation. This is challenged by the difficulty of resolving variant calls in repetitive …
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