[HTML][HTML] The treatment-naive microbiome in new-onset Crohn's disease

D Gevers, S Kugathasan, LA Denson… - Cell host & …, 2014 - cell.com
Inflammatory bowel diseases (IBDs), including Crohn's disease (CD), are genetically linked
to host pathways that implicate an underlying role for aberrant immune responses to …

[HTML][HTML] Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn's disease

JD Lewis, EZ Chen, RN Baldassano, AR Otley… - Cell host & …, 2015 - cell.com
Abnormal composition of intestinal bacteria—" dysbiosis"—is characteristic of Crohn's
disease. Disease treatments include dietary changes and immunosuppressive anti-TNFα …

[HTML][HTML] Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

Y Haberman, TL Tickle, PJ Dexheimer… - The Journal of …, 2014 - Am Soc Clin Investig
Interactions between the host and gut microbial community likely contribute to Crohn
disease (CD) pathogenesis; however, direct evidence for these interactions at the onset of …

[HTML][HTML] The fecal microbiota as a biomarker for disease activity in Crohn's disease

DI Tedjo, A Smolinska, PH Savelkoul, AA Masclee… - Scientific reports, 2016 - nature.com
Monitoring mucosal inflammation is crucial to prevent complications and disease
progression in Crohn's disease (CD). Endoscopy is the current standard, but is invasive …

Highlighting new phylogenetic specificities of Crohn's disease microbiota

S Mondot, S Kang, JP Furet… - Inflammatory bowel …, 2011 - academic.oup.com
Background Recent studies suggest that gastrointestinal (GI) microbes play a part in the
pathogenesis of Crohn's disease (CD). Methods Fecal samples were collected from 16 …

Bacteriome and mycobiome interactions underscore microbial dysbiosis in familial Crohn's disease

G Hoarau, PK Mukherjee, C Gower-Rousseau… - MBio, 2016 - Am Soc Microbiol
Crohn's disease (CD) results from a complex interplay between host genetic factors and
endogenous microbial communities. In the current study, we used Ion Torrent sequencing to …

[HTML][HTML] Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

KA Shaw, M Bertha, T Hofmekler, P Chopra… - Genome medicine, 2016 - Springer
Background Gut microbiome dysbiosis has been demonstrated in subjects with newly
diagnosed and chronic inflammatory bowel disease (IBD). In this study we sought to explore …

[HTML][HTML] Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn's disease

GM Douglas, R Hansen, CMA Jones, KA Dunn… - Microbiome, 2018 - Springer
Background Crohn's disease (CD) has an unclear etiology, but there is growing evidence of
a direct link with a dysbiotic microbiome. Many gut microbes have previously been …

Microbiota ofDe-NovoPediatric IBD: IncreasedFaecalibacterium Prausnitziiand Reduced Bacterial Diversity in Crohn's But Not in Ulcerative Colitis

R Hansen, RK Russell, C Reiff, P Louis… - Official journal of the …, 2012 - journals.lww.com
OBJECTIVES: The gastrointestinal microbiota is considered important in inflammatory bowel
disease (IBD) pathogenesis. Discoveries fromestablisheddisease cohorts report reduced …

Genetic risk, dysbiosis, and treatment stratification using host genome and gut microbiome in inflammatory bowel disease

A Moustafa, W Li, EL Anderson… - Clinical and …, 2018 - journals.lww.com
OBJECTIVES: Inflammatory bowel diseases (IBD), comprised of Crohn's disease (CD) and
ulcerative colitis (UC), are characterized by a complex pathophysiology that is thought to …