DockThor-VS: A Free Docking Server For Protein-Ligand Virtual Screening using the Supercomputer SDumont

IA Guedes, E Krempser, A Barreto, C Magalhães… - 2019 - proceedings.science
Resumo Receptor-ligand molecular docking1–3 is a structure-based approach widely used
by the scientific community in Medicinal Chemistry to assist the process of drug discovery …

DockThor-VS: A Free Platform for Receptor-Ligand Virtual Screening

IA Guedes, MMP da Silva, M Galheigo… - Journal of Molecular …, 2024 - Elsevier
The DockThor-VS platform (https://dockthor. lncc. br/v2/) is a free protein–ligand docking
server conceptualized to facilitate and assist drug discovery projects to perform docking …

[PDF][PDF] DockThor 2.0: a free web server for protein-ligand virtual screening

IA Guedes, E Krempser, LE Dardenne - XIX SBQT–Simpósio Brasileiro …, 2017 - fig.if.usp.br
INTRODUCTION. Receptor-ligand molecular docking is a structure-based approach widely
used by the scientific community in Medicinal Chemistry. The main objective is to assist the …

Nonlinear scoring functions for similarity-based ligand docking and binding affinity prediction

M Brylinski - 2013 - ACS Publications
A common strategy for virtual screening considers a systematic docking of a large library of
organic compounds into the target sites in protein receptors with promising leads selected …

Cov_DOX: a method for structure prediction of covalent protein–ligand bindings

L Wei, Y Chen, J Liu, L Rao, Y Ren… - Journal of Medicinal …, 2022 - ACS Publications
A handful of molecular docking tools have been extended to enable a covalent docking.
However, all of them face the challenge brought by the covalent bond between proteins and …

Consensus docking in drug discovery

G Poli, T Tuccinardi - Current Bioactive Compounds, 2020 - ingentaconnect.com
Background: Molecular docking is probably the most popular and profitable approach in
computer-aided drug design, being the staple technique for predicting the binding mode of …

vsLab—An implementation for virtual high‐throughput screening using AutoDock and VMD

N Cerqueira, J Ribeiro, PA Fernandes… - … Journal of Quantum …, 2011 - Wiley Online Library
Molecular docking is a key tool in structural molecular biology and computer‐assisted drug
design. The goal of ligand–protein docking is to predict the predominant binding mode (s) of …

DOCKTITE A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment

C Scholz, S Knorr, K Hamacher… - Journal of chemical …, 2015 - ACS Publications
The formation of a covalent bond with the target is essential for a number of successful
drugs, yet tools for covalent docking without significant restrictions regarding warhead or …

[PDF][PDF] Tailoring specialized scoring functions for more efficient virtual screening

T Vieira, R Magalhaes, S Sousa - Frontiers, 2019 - siriusstore.com
Protein-ligand docking is a computational method that is commonly applied to predict and
rank the structure of the complex formed between a specific protein-target and a small …

A new, improved hybrid scoring function for molecular docking and scoring based on AutoDock and AutoDock Vina

VY Tanchuk, VO Tanin, AI Vovk… - Chemical biology & drug …, 2016 - Wiley Online Library
Automated docking is one of the most important tools for structure‐based drug design that
allows prediction of ligand binding poses and also provides an estimate of how well small …