Recent advances in clustering methods for protein interaction networks
The increasing availability of large-scale protein-protein interaction data has made it
possible to understand the basic components and organization of cell machinery from the …
possible to understand the basic components and organization of cell machinery from the …
Clustering algorithms for detecting functional modules in protein interaction networks
L Gao, PG Sun, J Song - Journal of Bioinformatics and …, 2009 - World Scientific
Protein–Protein Interaction (PPI) networks are believed to be important sources of
information related to biological processes and complex metabolic functions of the cell …
information related to biological processes and complex metabolic functions of the cell …
An ensemble framework for clustering protein–protein interaction networks
Abstract Motivation: Protein–Protein Interaction (PPI) networks are believed to be important
sources of information related to biological processes and complex metabolic functions of …
sources of information related to biological processes and complex metabolic functions of …
Evaluation of clustering algorithms for protein-protein interaction networks
S Brohee, J Van Helden - BMC bioinformatics, 2006 - Springer
Background Protein interactions are crucial components of all cellular processes. Recently,
high-throughput methods have been developed to obtain a global description of the …
high-throughput methods have been developed to obtain a global description of the …
A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks
As advances in the technologies of predicting protein interactions, huge data sets portrayed
as networks have been available. Identification of functional modules from such networks is …
as networks have been available. Identification of functional modules from such networks is …
Detection of protein complexes in protein interaction networks using n-clubs
S Pasupuleti - … on Evolutionary Computation, Machine Learning and …, 2008 - Springer
Protein complexes, identified as functional modules in protein interaction networks, are
cellular entities that perform certain biological functions. Revealing these modular structures …
cellular entities that perform certain biological functions. Revealing these modular structures …
A novel functional module detection algorithm for protein-protein interaction networks
Background The sparse connectivity of protein-protein interaction data sets makes
identification of functional modules challenging. The purpose of this study is to critically …
identification of functional modules challenging. The purpose of this study is to critically …
An automated method for finding molecular complexes in large protein interaction networks
Background Recent advances in proteomics technologies such as two-hybrid, phage
display and mass spectrometry have enabled us to create a detailed map of biomolecular …
display and mass spectrometry have enabled us to create a detailed map of biomolecular …
Multifunctional proteins revealed by overlapping clustering in protein interaction network
E Becker, B Robisson, CE Chapple, A Guénoche… - …, 2012 - academic.oup.com
Motivation: Multifunctional proteins perform several functions. They are expected to interact
specifically with distinct sets of partners, simultaneously or not, depending on the function …
specifically with distinct sets of partners, simultaneously or not, depending on the function …
Functional clustering of yeast proteins from the protein-protein interaction network
Background The abundant data available for protein interaction networks have not yet been
fully understood. New types of analyses are needed to reveal organizational principles of …
fully understood. New types of analyses are needed to reveal organizational principles of …