RNA-seq data science: From raw data to effective interpretation
D Deshpande, K Chhugani, Y Chang… - Frontiers in …, 2023 - frontiersin.org
RNA sequencing (RNA-seq) has become an exemplary technology in modern biology and
clinical science. Its immense popularity is due in large part to the continuous efforts of the …
clinical science. Its immense popularity is due in large part to the continuous efforts of the …
Advanced applications of RNA sequencing and challenges
Next-generation sequencing technologies have revolutionarily advanced sequence-based
research with the advantages of high-throughput, high-sensitivity, and high-speed. RNA-seq …
research with the advantages of high-throughput, high-sensitivity, and high-speed. RNA-seq …
Bioinformatics for RNA-seq data analysis
While RNA sequencing (RNA-seq) has become increasingly popular for transcriptome
profiling, the analysis of the massive amount of data generated by large-scale RNA-seq still …
profiling, the analysis of the massive amount of data generated by large-scale RNA-seq still …
RNA-Seq analysis: methods, applications and challenges
RNA-seq has revolutionized the research community approach to studying gene expression.
In fact, this technology has opened up the possibility of quantifying the expression level of all …
In fact, this technology has opened up the possibility of quantifying the expression level of all …
A survey of best practices for RNA-seq data analysis
Abstract RNA-sequencing (RNA-seq) has a wide variety of applications, but no single
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
RNA sequencing data: hitchhiker's guide to expression analysis
K Van den Berge, KM Hembach… - Annual Review of …, 2019 - annualreviews.org
Gene expression is the fundamental level at which the results of various genetic and
regulatory programs are observable. The measurement of transcriptome-wide gene …
regulatory programs are observable. The measurement of transcriptome-wide gene …
Revealing the history and mystery of RNA-Seq
A Gondane, HM Itkonen - Current Issues in Molecular Biology, 2023 - mdpi.com
Advances in RNA-sequencing technologies have led to the development of intriguing
experimental setups, a massive accumulation of data, and high demand for tools to analyze …
experimental setups, a massive accumulation of data, and high demand for tools to analyze …
Modeling and analysis of RNA‐seq data: a review from a statistical perspective
Background Since the invention of next‐generation RNA sequencing (RNA‐seq)
technologies, they have become a powerful tool to study the presence and quantity of RNA …
technologies, they have become a powerful tool to study the presence and quantity of RNA …
Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Significant innovations in next-generation sequencing techniques and bioinformatics tools
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
RNA‐seq: Basic bioinformatics analysis
F Ji, RI Sadreyev - Current protocols in molecular biology, 2018 - Wiley Online Library
Quantitative analysis of gene expression is crucial for understanding the molecular
mechanisms underlying genome regulation. RNA‐seq is a powerful platform for …
mechanisms underlying genome regulation. RNA‐seq is a powerful platform for …