Biological researchers increasingly rely on computational models to integrate biological
systems knowledge, test hypotheses, and forecast system behavior. The expanding size of …

SBML is a machine-readable model representation language for software tools in
computational systems biology. By supporting SBML as an input/output format, different tools …

Modelling and simulation is a standard tool for research in the life sciences. Moreover,
distributed and collaborative modelling has become increasingly prominent. The growing …

Modeling the dynamics of biological processes is ubiquitous across the ecological and
evolutionary disciplines. However, the increasing complexity of these models poses a …

The past year has been an interesting one for those interested in reproducible research.
There have been great examples of replicability [1, 2] in research communication, and …

We describe a web-based tool, MakeSBML (https://sys-bio. github. io/makesbml/), that
provides an installation-free application for creating, editing, and searching the Biomodels …

In this technical report we describe a simple extension to python-libSBML that allows users
of Python to more easily construct SBML based models. The most commonly used package …

Motivation: Fabrication of synthetic biological systems is greatly enhanced by incorporating
engineering design principles and techniques such as computer-aided design. To this end …

Most computational models in biology are built and intended for “single-use”; the lack of
appropriate annotation creates models where the assumptions are unknown, and model …