Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications

J Chopyk, DJ Nasko, S Allard, A Bui, T Treangen… - Water Research, 2020 - Elsevier
The use of irrigation water sourced from reclamation facilities and untreated surface water
bodies may be a practical solution to attenuate the burden on diminishing groundwater …

Metagenomic analysis of bacterial and viral assemblages from a freshwater creek and irrigated field reveals temporal and spatial dynamics

J Chopyk, DJ Nasko, S Allard, MT Callahan… - Science of the Total …, 2020 - Elsevier
Lotic surface water sites (eg creeks) are important resources for localized agricultural
irrigation. However, there is concern that microbial contaminants within untreated surface …

Metabolically-active bacteria in reclaimed water and ponds revealed using bromodeoxyuridine DNA labeling coupled with 16S rRNA and shotgun sequencing

L Malayil, P Ramachandran, S Chattopadhyay… - Water Research, 2020 - Elsevier
Understanding the complex microbiota of agricultural irrigation water is vital to multiple
sectors of sustainable agriculture and public health. To date, microbiome characterization …

[HTML][HTML] Next-Generation High-Throughput Sequencing to Evaluate Bacterial Communities in Freshwater Ecosystem in Hydroelectric Reservoirs

MVR Rojas, DP Alonso, M Dropa, MTP Razzolini… - Microorganisms, 2022 - mdpi.com
The quality of aquatic ecosystems is a major public health concern. The assessment and
management of a freshwater system and the ecological monitoring of microorganisms that …

[HTML][HTML] Characterization of the microbiome at the world's largest potable water reuse facility

BW Stamps, MB Leddy, MH Plumlee… - Frontiers in …, 2018 - frontiersin.org
Conventional water resources are not sufficient in many regions to meet the needs of
growing populations. Due to cyclical weather cycles, drought, and climate change, water …

Using amplicon sequencing to characterize and monitor bacterial diversity in drinking water distribution systems

JLA Shaw, P Monis, LS Weyrich… - Applied and …, 2015 - Am Soc Microbiol
Drinking water assessments use a variety of microbial, physical, and chemical indicators to
evaluate water treatment efficiency and product water quality. However, these indicators do …

Variations in bacterial communities and antibiotic resistance genes across diverse recycled and surface water irrigation sources in the Mid-Atlantic and Southwest …

L Malayil, P Ramachandran… - … science & technology, 2022 - ACS Publications
Reduced availability of agricultural water has spurred increased interest in using recycled
irrigation water for US food crop production. However, there are significant knowledge gaps …

[HTML][HTML] Year-long metagenomic study of river microbiomes across land use and water quality

T Van Rossum, MA Peabody… - Frontiers in …, 2015 - frontiersin.org
Select bacteria, such as Escherichia coli or coliforms, have been widely used as sentinels of
low water quality; however, there are concerns regarding their predictive accuracy for the …

From source to filter: Changes in bacterial community composition during potable water treatment

E Zanacic, DW McMartin… - Canadian journal of …, 2017 - cdnsciencepub.com
Rural communities rely on surface water reservoirs for potable water. Effective removal of
chemical contaminants and bacterial pathogens from these reservoirs requires an …

[HTML][HTML] Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

CL Hemme, Q Tu, Z Shi, Y Qin, W Gao… - Frontiers in …, 2015 - frontiersin.org
To understand patterns of geochemical cycling in pristine versus contaminated groundwater
ecosystems, pristine shallow groundwater (FW301) and contaminated groundwater (FW106) …