Phylogenetic incongruence: window into genome history and molecular evolution

JF Wendel, JJ Doyle - Molecular systematics of plants II: DNA sequencing, 1998 - Springer
The field of systematic biology has been revitalized and transformed during the last few
decades by the confluence of phylogenetic thinking with ready access to the tools of …

Choosing an approach and an appropriate gene for phylogenetic analysis

DE Soltis, PS Soltis - Molecular systematics of plants II: DNA sequencing, 1998 - Springer
A diverse array of molecular approaches is now available to the plant systematist for use in
phylogenetic inference, including restriction site analysis, comparative sequencing, analysis …

Assessing congruence: empirical examples from molecular data

LA Johnson, DE Soltis - Molecular systematics of plants II: DNA …, 1998 - Springer
Numerous DNA regions representing the nuclear and both organellar genomes are now
available for comparative sequencing in plants (see Chapter 1); in addition, morphological …

The continuing search: low-copy nuclear sequences for lower-level plant molecular phylogenetic studies

ME Mort, DJ Crawford - Taxon, 2004 - JSTOR
A recent survey by Alvarez & Wendel (2003) revealed that during a five-year period over
65% of all molecular phylogenetic studies of plants at the generic level or lower included …

Gene trees and species trees: molecular systematics as one-character taxonomy

JJ Doyle - Systematic Botany, 1992 - JSTOR
Reconstruction of phylogenies from molecular data has become an important and
increasingly common approach in systematics. The product of such studies is a gene tree …

Molecular systematics and crop evolution

J Doebley - Molecular systematics of plants, 1992 - Springer
During the past decade, the tools of molecular biology have been applied to plant
systematics with remarkable success. New insights have been gained into such topics as …

Evolution of genes and taxa: a primer

JJ Doyle, BS Gaut - Plant Molecular Evolution, 2000 - Springer
The rapidly growing fields of molecular evolution and systematics have much to offer to
molecular biology, but like any field have their own repertoire of terms and concepts …

The potential of genomics in plant systematics

DE Soltis, MA Gitzendanner, G Stull, M Chester… - Taxon, 2013 - Wiley Online Library
Next‐generation sequencing (NGS) has revolutionized molecular systematics as well as
population and conservation genetics. It is now possible to obtain enormous amounts of …

A step by step guide to phylogeny reconstruction

C Jill Harrison, JA Langdale - The Plant Journal, 2006 - Wiley Online Library
The aim of this paper is to enable those who have never reconstructed a phylogeny to do so
from scratch. The paper does not attempt to be a comprehensive theoretical guide, but …

[图书][B] Molecular systematics of plants II: DNA sequencing

P Soltis, JJ Doyle - 2012 - books.google.com
In the five years since the publication of Molecular Systematics of Plants, the field of
molecular systematics has advanced at an astonishing pace. This period has been marked …