Restriction site‐associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
Restriction site‐associated DNA sequencing (RAD seq) provides researchers with the ability
to record genetic polymorphism across thousands of loci for nonmodel organisms …
to record genetic polymorphism across thousands of loci for nonmodel organisms …
[HTML][HTML] Selecting RAD-Seq data analysis parameters for population genetics: the more the better?
N Díaz-Arce, N Rodríguez-Ezpeleta - Frontiers in genetics, 2019 - frontiersin.org
Restriction site-associated DNA sequencing (RAD-seq) has become a powerful and widely
used tool in molecular ecology studies as it allows to cost-effectively recover thousands of …
used tool in molecular ecology studies as it allows to cost-effectively recover thousands of …
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Sequencing reduced‐representation libraries of restriction site‐associated DNA (RAD seq)
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates
Restriction‐enzyme‐based sequencing methods enable the genotyping of thousands of
single nucleotide polymorphism (SNP) loci in nonmodel organisms. However, in contrast to …
single nucleotide polymorphism (SNP) loci in nonmodel organisms. However, in contrast to …
Estimating and accounting for genotyping errors in RAD‐seq experiments
L Bresadola, V Link, CA Buerkle… - Molecular Ecology …, 2020 - Wiley Online Library
In non‐model organisms, evolutionary questions are frequently addressed using reduced
representation sequencing techniques due to their low cost, ease of use, and because they …
representation sequencing techniques due to their low cost, ease of use, and because they …
Lost in parameter space: a road map for stacks
JR Paris, JR Stevens… - Methods in Ecology and …, 2017 - Wiley Online Library
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genotyping populations of model and non‐model organisms. Generating a …
method for genotyping populations of model and non‐model organisms. Generating a …
Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …
RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al. (2016)
In their recently corrected manuscript,“Breaking RAD: An evaluation of the utility of restriction
site associated DNA sequencing for genome scans of adaptation”, Lowry et al. argue that …
site associated DNA sequencing for genome scans of adaptation”, Lowry et al. argue that …
Genotyping‐in‐Thousands by sequencing (GT‐seq) panel development and application to minimally invasive DNA samples to support studies in molecular ecology
DA Schmidt, NR Campbell… - Molecular Ecology …, 2020 - Wiley Online Library
Minimally invasive sampling (MIS) is widespread in wildlife studies; however, its utility for
massively parallel DNA sequencing (MPS) is limited. Poor sample quality and contamination …
massively parallel DNA sequencing (MPS) is limited. Poor sample quality and contamination …
RAD cap: sequence capture of dual‐digest RAD seq libraries with identifiable duplicates and reduced missing data
Molecular ecologists seek to genotype hundreds to thousands of loci from hundreds to
thousands of individuals at minimal cost per sample. Current methods, such as restriction …
thousands of individuals at minimal cost per sample. Current methods, such as restriction …