[HTML][HTML] Comprehensive characterization of cancer driver genes and mutations
Identifying molecular cancer drivers is critical for precision oncology. Multiple advanced
algorithms to identify drivers now exist, but systematic attempts to combine and optimize …
algorithms to identify drivers now exist, but systematic attempts to combine and optimize …
OncoVar: an integrated database and analysis platform for oncogenic driver variants in cancers
The prevalence of neutral mutations in cancer cell population impedes the distinguishing of
cancer-causing driver mutations from passenger mutations. To systematically prioritize the …
cancer-causing driver mutations from passenger mutations. To systematically prioritize the …
[HTML][HTML] The mutational landscape of phosphorylation signaling in cancer
Somatic mutations in cancer genomes include drivers that provide selective advantages to
tumor cells and passengers present due to genome instability. Discovery of pan-cancer …
tumor cells and passengers present due to genome instability. Discovery of pan-cancer …
[HTML][HTML] Comprehensive identification of mutational cancer driver genes across 12 tumor types
D Tamborero, A Gonzalez-Perez, C Perez-Llamas… - Scientific reports, 2013 - nature.com
With the ability to fully sequence tumor genomes/exomes, the quest for cancer driver genes
can now be undertaken in an unbiased manner. However, obtaining a complete catalog of …
can now be undertaken in an unbiased manner. However, obtaining a complete catalog of …
[HTML][HTML] CHASMplus reveals the scope of somatic missense mutations driving human cancers
Large-scale cancer sequencing studies of patient cohorts have statistically implicated many
genes driving cancer growth and progression, and their identification has yielded substantial …
genes driving cancer growth and progression, and their identification has yielded substantial …
[HTML][HTML] Identification of druggable cancer driver genes amplified across TCGA datasets
Y Chen, J McGee, X Chen, TN Doman, X Gong… - PloS one, 2014 - journals.plos.org
The Cancer Genome Atlas (TCGA) projects have advanced our understanding of the driver
mutations, genetic backgrounds, and key pathways activated across cancer types. Analysis …
mutations, genetic backgrounds, and key pathways activated across cancer types. Analysis …
DriverML: a machine learning algorithm for identifying driver genes in cancer sequencing studies
Although rapid progress has been made in computational approaches for prioritizing cancer
driver genes, research is far from achieving the ultimate goal of discovering a complete …
driver genes, research is far from achieving the ultimate goal of discovering a complete …
Identification of cancer driver genes based on nucleotide context
Cancer genomes contain large numbers of somatic mutations but few of these mutations
drive tumor development. Current approaches either identify driver genes on the basis of …
drive tumor development. Current approaches either identify driver genes on the basis of …
e-Driver: a novel method to identify protein regions driving cancer
E Porta-Pardo, A Godzik - Bioinformatics, 2014 - academic.oup.com
Motivation: Most approaches used to identify cancer driver genes focus, true to their name,
on entire genes and assume that a gene, treated as one entity, has a specific role in cancer …
on entire genes and assume that a gene, treated as one entity, has a specific role in cancer …
DriverDBv2: a database for human cancer driver gene research
We previously presented DriverDB, a database that incorporates∼ 6000 cases of exome-
seq data, in addition to annotation databases and published bioinformatics algorithms …
seq data, in addition to annotation databases and published bioinformatics algorithms …