[HTML][HTML] Comprehensive characterization of cancer driver genes and mutations

MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta… - Cell, 2018 - cell.com
Identifying molecular cancer drivers is critical for precision oncology. Multiple advanced
algorithms to identify drivers now exist, but systematic attempts to combine and optimize …

OncoVar: an integrated database and analysis platform for oncogenic driver variants in cancers

T Wang, S Ruan, X Zhao, X Shi, H Teng… - Nucleic acids …, 2021 - academic.oup.com
The prevalence of neutral mutations in cancer cell population impedes the distinguishing of
cancer-causing driver mutations from passenger mutations. To systematically prioritize the …

[HTML][HTML] The mutational landscape of phosphorylation signaling in cancer

J Reimand, O Wagih, GD Bader - Scientific reports, 2013 - nature.com
Somatic mutations in cancer genomes include drivers that provide selective advantages to
tumor cells and passengers present due to genome instability. Discovery of pan-cancer …

[HTML][HTML] Comprehensive identification of mutational cancer driver genes across 12 tumor types

D Tamborero, A Gonzalez-Perez, C Perez-Llamas… - Scientific reports, 2013 - nature.com
With the ability to fully sequence tumor genomes/exomes, the quest for cancer driver genes
can now be undertaken in an unbiased manner. However, obtaining a complete catalog of …

[HTML][HTML] CHASMplus reveals the scope of somatic missense mutations driving human cancers

C Tokheim, R Karchin - Cell systems, 2019 - cell.com
Large-scale cancer sequencing studies of patient cohorts have statistically implicated many
genes driving cancer growth and progression, and their identification has yielded substantial …

[HTML][HTML] Identification of druggable cancer driver genes amplified across TCGA datasets

Y Chen, J McGee, X Chen, TN Doman, X Gong… - PloS one, 2014 - journals.plos.org
The Cancer Genome Atlas (TCGA) projects have advanced our understanding of the driver
mutations, genetic backgrounds, and key pathways activated across cancer types. Analysis …

DriverML: a machine learning algorithm for identifying driver genes in cancer sequencing studies

Y Han, J Yang, X Qian, WC Cheng, SH Liu… - Nucleic acids …, 2019 - academic.oup.com
Although rapid progress has been made in computational approaches for prioritizing cancer
driver genes, research is far from achieving the ultimate goal of discovering a complete …

Identification of cancer driver genes based on nucleotide context

F Dietlein, D Weghorn, A Taylor-Weiner, A Richters… - Nature …, 2020 - nature.com
Cancer genomes contain large numbers of somatic mutations but few of these mutations
drive tumor development. Current approaches either identify driver genes on the basis of …

e-Driver: a novel method to identify protein regions driving cancer

E Porta-Pardo, A Godzik - Bioinformatics, 2014 - academic.oup.com
Motivation: Most approaches used to identify cancer driver genes focus, true to their name,
on entire genes and assume that a gene, treated as one entity, has a specific role in cancer …

DriverDBv2: a database for human cancer driver gene research

IF Chung, CY Chen, SC Su, CY Li, KJ Wu… - Nucleic acids …, 2016 - academic.oup.com
We previously presented DriverDB, a database that incorporates∼ 6000 cases of exome-
seq data, in addition to annotation databases and published bioinformatics algorithms …