Genome-Scale Identification of Nucleosome Positions in S. cerevisiae

GC Yuan, YJ Liu, MF Dion, MD Slack, LF Wu… - Science, 2005 - science.org
The positioning of nucleosomes along chromatin has been implicated in the regulation of
gene expression in eukaryotic cells, because packaging DNA into nucleosomes affects …

A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome

Z Zhang, CJ Wippo, M Wal, E Ward, P Korber, BF Pugh - Science, 2011 - science.org
Near the 5′ end of most eukaryotic genes, nucleosomes form highly regular arrays that
begin at canonical distances from the transcriptional start site. Determinants of this and other …

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

T Gkikopoulos, P Schofield, V Singh, M Pinskaya… - Science, 2011 - science.org
The positioning of nucleosomes within the coding regions of eukaryotic genes is aligned
with respect to transcriptional start sites. This organization is likely to influence many genetic …

Determinants of nucleosome organization in primary human cells

A Valouev, SM Johnson, SD Boyd, CL Smith, AZ Fire… - Nature, 2011 - nature.com
Nucleosomes are the basic packaging units of chromatin, modulating accessibility of
regulatory proteins to DNA and thus influencing eukaryotic gene regulation. Elaborate …

A map of nucleosome positions in yeast at base-pair resolution

K Brogaard, L Xi, JP Wang, J Widom - Nature, 2012 - nature.com
The exact positions of nucleosomes along genomic DNA can influence many aspects of
chromosome function. However, existing methods for mapping nucleosomes do not provide …

A high-resolution atlas of nucleosome occupancy in yeast

W Lee, D Tillo, N Bray, RH Morse, RW Davis… - Nature …, 2007 - nature.com
We present the first complete high-resolution map of nucleosome occupancy across the
whole Saccharomyces cerevisiae genome, identifying over 70,000 positioned nucleosomes …

Nucleosome positions predicted through comparative genomics

IP Ioshikhes, I Albert, SJ Zanton, BF Pugh - Nature genetics, 2006 - nature.com
DNA sequence has long been recognized as an important contributor to nucleosome
positioning, which has the potential to regulate access to genes. The extent to which the …

The DNA-encoded nucleosome organization of a eukaryotic genome

N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett… - Nature, 2009 - nature.com
Nucleosome organization is critical for gene regulation. In living cells this organization is
determined by multiple factors, including the action of chromatin remodellers, competition …

A genomic code for nucleosome positioning

E Segal, Y Fondufe-Mittendorf, L Chen, AC Thåström… - Nature, 2006 - nature.com
Eukaryotic genomes are packaged into nucleosome particles that occlude the DNA from
interacting with most DNA binding proteins. Nucleosomes have higher affinity for particular …

Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing

B Lai, W Gao, K Cui, W Xie, Q Tang, W Jin, G Hu, B Ni… - Nature, 2018 - nature.com
Nucleosome positioning is critical to chromatin accessibility and is associated with gene
expression programs in cells,–. Previous nucleosome mapping methods assemble profiles …