An improved adaptive genetic algorithm for proteinligand docking

L Kang, H Li, H Jiang, X Wang - Journal of computer-aided molecular …, 2009 - Springer
docking is proposed, and a fast flexible docking method based on an improved adaptive
genetic algorithm is … The algorithm takes some advanced techniques, such as multi-population …

Improving protein docking using sustainable genetic algorithms

E Atilgan, J Hu - … Journal of Computer Information Systems and …, 2011 - cspub-ijcisim.org
… the main advantage of sustainable evolutionary algorithms is their capability to … protein-ligand
docking programs can also be potentially improved by the sustainable genetic algorithms

Flexible ligand docking using a genetic algorithm

CM Oshiro, ID Kuntz, JS Dixon - Journal of computer-aided molecular …, 1995 - Springer
… In this paper, we evaluate the usefulness of the genetic algorithm (GA) to dock conformationally
flexible ligands into a rigid enzyme. The long-term objective of this work is to develop a …

Evaluating genetic algorithms in protein-ligand docking

R Ördög, V Grolmusz - International Symposium on Bioinformatics …, 2008 - Springer
… One of the very few protein-ligand docking software with … Autodock 3.05 uses a Lamarckian
genetic algorithm for global … that the docking energies found by the genetic algorithm have …

Adaptive molecular docking method based on information entropy genetic algorithm

Z Li, J Gu, H Zhuang, L Kang, X Zhao, Q Guo - Applied Soft Computing, 2015 - Elsevier
… To evaluate this method, we carried out a numerical experiment with 134 proteinligand
can bind to known protein binding sites. In this paper, an improved adaptive GA is adopted [23], …

Proteinligand docking with evolutionary algorithms

R Thomsen - Computational Intelligence in Bioinformatics, 2007 - Wiley Online Library
proteinligand docking. This chapter contains an overview of proteinligand docking algorithms
… the scoring functions used to evaluate docking solutions. The chapter concludes with an …

A biased random key genetic algorithm for the proteinligand docking problem

PF Leonhart, E Spieler, R Ligabue-Braun, M Dorn - Soft Computing, 2019 - Springer
… the best proteinligand binding affinity, the development of new strategies, the adaptation,
and … to the molecular docking problem are needed. We developed a Biased Random Key …

Proteinligand docking using differential evolution with an adaptive mechanism

S Song, X Chen, Y Zhang, Z Tang, Y Todo - Knowledge-Based Systems, 2021 - Elsevier
evolutionary algorithms, such as adaptive DE, contributes to solving the proteinligand
docking … In this study, we attempt to improve the performance of a proteinligand docking

An efficient ABC_DE_based hybrid algorithm for proteinligand docking

B Guan, C Zhang, Y Zhao - International journal of molecular sciences, 2018 - mdpi.com
… (LGA), running history information guided genetic algorithm (… the algorithm is more applicable
to solve the proteinligand … Comparing Algorithm 1 with Algorithm 2, when the p-value …

ProteinLigand Docking

GM Morris, AJ Olson… - Evolutionary algorithms in …, 2000 - Wiley Online Library
… The program was tested on four protein-ligand complexes, … improve the binary
chromosome-based genetic algorithm (see section 3.5). Clark and Ajay also used their genetic