Optimization of large-scale mouse brain connectome via joint evaluation of DTI and neuron tracing data

H Chen, T Liu, Y Zhao, T Zhang, Y Li, M Li, H Zhang… - Neuroimage, 2015 - Elsevier
DTI tractography in constructing large-scale connectome? To answer this question, we …
neuron tracing data of 1772 experiments on the mouse brain released by the Allen Mouse Brain

Construct and assess multimodal mouse brain connectomes via joint modeling of multi-scale DTI and neuron tracer data

H Chen, Y Zhao, T Zhang, H Zhang, H Kuang… - … Image Computing and …, 2014 - Springer
… of macro-scale DTI data and meso-scale neuronal tracing data. … To analyze large-scale
mouse brain connectomes in different … optimisation method for robust affine registration of brain

Optimization of macaque brain DMRI connectome by neuron tracing and myelin stain data

T Zhang, J Kong, K Jing, H Chen, X Jiang, L Li… - … Medical Imaging and …, 2018 - Elsevier
… To achieve this goal, we construct large-scale connectome … 1) to what extent are DTI
tractography pathways coincide with … Similar to evaluations from tract-tracing data, we had one C …

[HTML][HTML] The role of spatial embedding in mouse brain networks constructed from diffusion tractography and tracer injections

S Trinkle, S Foxley, G Wildenberg, N Kasthuri… - Neuroimage, 2021 - Elsevier
data in mice and neural tracer data from the Allen Mouse … of the true mesoscale connectome
of the mouse brain. Furthermore, we … of each brain graph was determined by optimizing the …

Whole mouse brain structural connectomics using magnetic resonance histology

N Wang, RJ Anderson, A Badea, G Cofer… - Brain Structure and …, 2018 - Springer
… We optimized the k-space sampling strategy for CS diffusion … reduce the acquisition time of
mouse brain DTI scans at 9.4 T … and a large-scale connectome in a single mouse brain, that …

[PDF][PDF] Research White Paper

H Chen - 2007 - cobweb.cs.uga.edu
… ), we have developed a large-scale computing framework to … define and optimize brain ROIs
by include joint information from … DTI data across macaque, chimpanzee, and human brain, …

[HTML][HTML] Structural and functional, empirical and modeled connectivity in the cerebral cortex of the rat

A Diaz-Parra, Z Osborn, S Canals, D Moratal, O Sporns - Neuroimage, 2017 - Elsevier
… available in TVB to joint optimization of their conduction … For instance, in the context of
large-scale brain networks, as in the … SC obtained from DTI, which may allow a neural mass model …

Estimating brain connectivity with diffusion-weighted magnetic resonance imaging: promise and peril

MD Grier, J Zimmermann, SR Heilbronner - … : Cognitive Neuroscience and …, 2020 - Elsevier
… are used to model neuronal projections and estimate … Herein, we will review publications
comparing anatomical tract tracing … This suggests that subject- or tract-specific optimization may …

[HTML][HTML] Connectome imaging for mapping human brain pathways

Y Shi, AW Toga - Molecular psychiatry, 2017 - nature.com
… For large-scale studies such as the HCP, we need to … Optimization of existing connectome
protocols for a given time … With conventional DTI technology, major cortical bundles have …

Indexing and mining large-scale neuron databases using maximum inner product search

Z Li, R Fang, F Shen, A Katouzian, S Zhang - Pattern Recognition, 2017 - Elsevier
evaluate the proposed method on more than 17,000 neurons… the 3D neuron morphological
data, neuron tracing consists a … , we need to optimize W and R from the training neurons A , X …