[HTML][HTML] MSstatsTMT: statistical detection of differentially abundant proteins in experiments with isobaric labeling and multiple mixtures

T Huang, M Choi, M Tzouros, S Golling… - Molecular & Cellular …, 2020 - ASBMB
Tandem mass tag (TMT) is a multiplexing technology widely-used in proteomic research. It
enables relative quantification of proteins from multiple biological samples in a single MS …

Physiological responses of a Southern Ocean diatom to complex future ocean conditions

PW Boyd, PW Dillingham, CM McGraw… - Nature Climate …, 2016 - nature.com
A changing climate is altering many ocean properties that consequently will modify marine
productivity. Previous phytoplankton manipulation studies have focused on individual or …

The Flavodiiron Protein Flv3 Functions as a Homo-Oligomer During Stress Acclimation and is Distinct from the Flv1/Flv3 Hetero-Oligomer Specific to the O2 …

H Mustila, P Paananen, N Battchikova… - Plant and Cell …, 2016 - academic.oup.com
Abstract The flavodiiron proteins (FDPs) Flv1 and Flv3 in cyanobacteria function in
photoreduction of O2 to H2O, without concomitant formation of reactive oxygen species …

[HTML][HTML] Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human …

K Surmann, S Michalik, P Hildebrandt… - Frontiers in …, 2014 - frontiersin.org
Staphylococcus aureus is a human pathogen that can cause a wide range of diseases.
Although formerly regarded as extracellular pathogen, it has been shown that S. aureus can …

Development of a Quantitative SRM-Based Proteomics Method to Study Iron Metabolism of Synechocystis sp. PCC 6803

L Vuorijoki, J Isojarvi, P Kallio… - Journal of Proteome …, 2016 - ACS Publications
The cyanobacterium Synechocystis sp. PCC 6803 (S. 6803) is a well-established model
species in oxygenic photosynthesis research and a potential host for biotechnological …

Global proteomic response of unicellular cyanobacterium Synechocystis sp. PCC 6803 to fluctuating light upon CO2 step‐down

H Mustila, D Muth‐Pawlak, EM Aro… - Physiologia …, 2021 - Wiley Online Library
Photosynthetic cyanobacteria are exposed to rapid changes in light intensity in their natural
habitats, as well as in photobioreactors. To understand the effects of such fluctuations on …

[HTML][HTML] Inactivation of iron-sulfur cluster biogenesis regulator SufR in Synechocystis sp. PCC 6803 induces unique iron-dependent protein-level responses

L Vuorijoki, A Tiwari, P Kallio, EM Aro - Biochimica et Biophysica Acta (BBA …, 2017 - Elsevier
Abstract Background Iron-sulfur (Fe-S) clusters are protein-bound cofactors associated with
cellular electron transport and redox sensing, with multiple specific functions in oxygen …

Statistical approach for biomarker discovery using label-free LC-MS data: an overview

C Truntzer, P Ducoroy - … of Proteomics, Metabolomics, and Lipidomics Data …, 2017 - Springer
The identification of new diagnostic, prognostic, or theranostics biomarkers is one of the
main aims of clinical research. Technologies like mass spectrometry (MS) focus on the …