Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

[PDF][PDF] The integrated genomics of crop domestication and breeding

X Huang, S Huang, B Han, J Li - Cell, 2022 - cell.com
As a major event in human civilization, wild plants were successfully domesticated to be
crops, largely owing to continuing artificial selection. Here, we summarize new discoveries …

[PDF][PDF] A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding

Y Deng, S Liu, Y Zhang, J Tan, X Li, X Chu, B Xu… - Molecular plant, 2022 - cell.com
Watermelon, Citrullus lanatus, is the world's third largest fruit crop. Reference genomes with
gaps and a narrow genetic base hinder functional genomics and genetic improvement of …

High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads

B Wang, X Yang, Y Jia, Y Xu, P Jia… - Genomics …, 2022 - academic.oup.com
Arabidopsis thaliana is an important and long-established model species for plant molecular
biology, genetics, epigenetics, and genomics. However, the latest version of reference …

Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes

F Zhang, H Xue, X Dong, M Li, X Zheng, Z Li… - Genome …, 2022 - genome.cshlp.org
The concept of pan-genome, which is the collection of all genomes from a population, has
shown a great potential in genomics study, especially for crop sciences. The rice pan …

[PDF][PDF] From Green Super Rice to green agriculture: Reaping the promise of functional genomics research

S Yu, J Ali, S Zhou, G Ren, H Xie, J Xu, X Yu, F Zhou… - Molecular Plant, 2022 - cell.com
Producing sufficient food with finite resources to feed the growing global population while
having a smaller impact on the environment has always been a great challenge. Here, we …

Fujian cytoplasmic male sterility and the fertility restorer gene OsRf19 provide a promising breeding system for hybrid rice

H Jiang, Q Lu, S Qiu, H Yu, Z Wang… - Proceedings of the …, 2022 - National Acad Sciences
Cytoplasmic male sterility (CMS) determined by mitochondrial genes and restorer of fertility
(Rf) controlled by nuclear-encoded genes provide the breeding systems of many hybrid …

Understanding the genetic and molecular constitutions of heterosis for developing hybrid rice

Y Ouyang, X Li, Q Zhang - Journal of Genetics and Genomics, 2022 - Elsevier
The wide adoption of hybrid rice has greatly increased rice yield in the last several decades.
The utilization of heterosis facilitated by male sterility has been a common strategy for hybrid …

Centromeres: From chromosome biology to biotechnology applications and synthetic genomes in plants

J Zhou, Y Liu, X Guo, JA Birchler… - Plant Biotechnology …, 2022 - Wiley Online Library
Centromeres are the genomic regions that organize and regulate chromosome behaviours
during cell cycle, and their variations are associated with genome instability, karyotype …

[PDF][PDF] Twenty years of rice genomics research: From sequencing and functional genomics to quantitative genomics

C Wang, B Han - Molecular Plant, 2022 - cell.com
Since the completion of the rice genome sequencing project in 2005, we have entered the
era of rice genomics, which is still in its ascendancy. Rice genomics studies can be …