Evolution of plant genome architecture

JF Wendel, SA Jackson, BC Meyers, RA Wing - Genome biology, 2016 - Springer
We have witnessed an explosion in our understanding of the evolution and structure of plant
genomes in recent years. Here, we highlight three important emergent realizations:(1) that …

Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungusfusariumare nonorthologous

K O'Donnell, E Cigelnik - Molecular phylogenetics and evolution, 1997 - Elsevier
The evolutionary history of the phytopathogenicGibberella fujikuroicomplex ofFusariumand
related species was investigated by cladistic analysis of DNA sequences obtained from …

Ribosomal ITS sequences and plant phylogenetic inference

I Álvarez, JF Wendel - Molecular phylogenetics and evolution, 2003 - Elsevier
One of the most popular sequences for phylogenetic inference at the generic and
infrageneric levels in plants is the internal transcribed spacer (ITS) region of the 18S–5.8 S …

Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)

T Sang, DJ Crawford, TF Stuessy - American journal of Botany, 1997 - Wiley Online Library
The coding region of the matK gene and two intergenic spacers, psbA‐trnH and trnL (UAA)‐
trnF (GAA), of cpDNA were sequenced to study phylogenetic relationships of 32 Paeonia …

A molecular phylogeny of Phytophthora and related oomycetes

DEL Cooke, A Drenth, JM Duncan, G Wagels… - Fungal genetics and …, 2000 - Elsevier
Phylogenetic relationships among 50 Phytophthora species and between Phytophthora and
other oomycetes were examined on the basis of the ITS sequences of genomic rDNA …

Genome evolution in polyploids

JF Wendel - Plant molecular evolution, 2000 - Springer
Polyploidy is a prominent process in plants and has been significant in the evolutionary
history of vertebrates and other eukaryotes. In plants, interdisciplinary approaches …

Molecular systematics and phylogeography of the Gibberella fujikuroi species complex

K O'Donnell, E Cigelnik, HI Nirenberg - Mycologia, 1998 - Taylor & Francis
Phylogenetic relationships of the phyto-pathogenic Gibberella fujikuroi species complex
were investigated by maximum parsimony analysis of DNA sequences from multiple loci …

Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution.

K Song, P Lu, K Tang… - Proceedings of the …, 1995 - National Acad Sciences
Although the evolutionary success of polyploidy in higher plants has been widely
recognized, there is virtually no information on how polyploid genomes have evolved after …

Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species

JA Tate, BB Simpson - Systematic Botany, 2003 - BioOne
A molecular phylogenetic analysis of the Andean genus Tarasa (Malvaceae) and related
genera yielded unexpected results regarding generic boundaries, the origins of polyploidy …