G Quadruplex‐Based FRET Probes with the Thrombin‐Binding Aptamer (TBA) Sequence Designed for the Efficient Fluorometric Detection of the Potassium Ion

S Nagatoishi, T Nojima, E Galezowska… - …, 2006 - Wiley Online Library
S Nagatoishi, T Nojima, E Galezowska, B Juskowiak, S Takenaka
ChemBioChem, 2006Wiley Online Library
The dual‐labeled oligonucleotide derivative, FAT‐0, carrying 6‐carboxyfluorescein (FAM)
and 6‐carboxytetramethylrhodamine (TAMRA) labels at the 5′ and 3′ termini of the
thrombin‐binding aptamer (TBA) sequence 5′‐GGT TGG TGT GGT TGG‐3′, and its
derivatives, FAT‐n (n= 3, 5, and 7) with a spacer at the 5′‐end of a TBA sequence of TmA
(m= 2, 4, and 6) have been designed and synthesized. These fluorescent probes were
developed for monitoring K+ concentrations in living organisms. Circular dichroism, UV …
Abstract
The dual‐labeled oligonucleotide derivative, FAT‐0, carrying 6‐ carboxyfluorescein (FAM) and 6‐carboxytetramethylrhodamine (TAMRA) labels at the 5′ and 3′ termini of the thrombin‐binding aptamer (TBA) sequence 5′‐GGT TGG TGT GGT TGG‐3′, and its derivatives, FAT‐n (n=3, 5, and 7) with a spacer at the 5′‐end of a TBA sequence of TmA (m=2, 4, and 6) have been designed and synthesized. These fluorescent probes were developed for monitoring K+ concentrations in living organisms. Circular dichroism, UV‐visible absorption, and fluorescence studies revealed that all FAT‐n probes could form intramolecular tetraplex structures after binding K+. Fluorescence resonance energy transfer and quenching results are discussed taking into account dye–dye contact interactions. The relationship between the fluorescence behavior of the probes and the spacer length in FAT‐n was studied in detail and is discussed.
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