Pedobacter ginsengisoli sp. nov., a DNase-producing bacterium isolated from soil of a ginseng field in South Korea

LN Ten, QM Liu, WT Im, M Lee… - … of systematic and …, 2006 - microbiologyresearch.org
LN Ten, QM Liu, WT Im, M Lee, DC Yang, ST Lee
International journal of systematic and evolutionary …, 2006microbiologyresearch.org
A Gram-negative, strictly aerobic, rod-shaped, non-motile, non-spore-forming bacterial
strain, designated Gsoil 104T, was isolated from a soil sample from a ginseng field in
Pocheon Province (South Korea) and was characterized taxonomically by using a
polyphasic approach. On the basis of 16S rRNA gene sequence similarities, strain Gsoil
104T was shown to belong to the family Sphingobacteriaceae, being related to Pedobacter
africanus DSM 12126T (97.0%), Pedobacter caeni LMG 22862T (96.9%), Pedobacter …
A Gram-negative, strictly aerobic, rod-shaped, non-motile, non-spore-forming bacterial strain, designated Gsoil 104T, was isolated from a soil sample from a ginseng field in Pocheon Province (South Korea) and was characterized taxonomically by using a polyphasic approach. On the basis of 16S rRNA gene sequence similarities, strain Gsoil 104T was shown to belong to the family Sphingobacteriaceae, being related to Pedobacter africanus DSM 12126T (97.0 %), Pedobacter caeni LMG 22862T (96.9 %), Pedobacter cryoconitis DSM 14825T (96.8 %) and Pedobacter heparinus DSM 2366T (96.6 %). The phylogenetic distance from any other Pedobacter species with a validly published name was greater than 3.4 % (i.e. <96.6 % 16S rRNA gene sequence similarity). DNA–DNA hybridization experiments showed that values for DNA–DNA relatedness between strain Gsoil 104T and its phylogenetically closest neighbours were below 37 %. The G+C content of the genomic DNA was 43.6 mol%. The predominant respiratory quinone was MK-7. The major fatty acids were C16 : 1 ω7c, iso-C15 : 0, C16 : 0, iso-C17 : 0 3-OH and iso-C15 : 0 2-OH. These chemotaxonomic data support the affiliation of strain Gsoil 104T to the genus Pedobacter. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain Gsoil 104T represents a novel species in the genus Pedobacter, for which the name Pedobacter ginsengisoli sp. nov. is proposed. The type strain is Gsoil 104T (=KCTC 12576T=LMG 23399T).
Microbiology Research
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