Multiple β‐sheet molecular dynamics of amyloid formation from two ABl‐SH3 domain peptides
D Lapidus, V Duka, V Stonkus, C Czaplewski… - Peptide …, 2012 - Wiley Online Library
Molecular dynamics simulations in explicit water were carried out for two stacks, each
composed of six 10‐strand antiparallel β‐sheets for two peptides corresponding to the …
composed of six 10‐strand antiparallel β‐sheets for two peptides corresponding to the …
Molecular dynamics study of amyloid formation of two Abl‐SH3 domain peptides
I Liepina, S Ventura, C Czaplewski… - Journal of Peptide …, 2006 - Wiley Online Library
Molecular dynamics (MD) simulations were carried out for two‐strand and ten‐strand β‐
sheets constructed from two peptides corresponding to the diverging turn of two homologous …
sheets constructed from two peptides corresponding to the diverging turn of two homologous …
Molecular insights into the oligomerization dynamics and conformations of amyloidogenic and non-amyloidogenic amylin from discrete molecular dynamics …
The amyloid aggregation of human islet amyloid polypeptide (hIAPP) is associated with
pancreatic β-cell death in type 2 diabetes. The S20G substitution of hIAPP (hIAPP (S20G)) …
pancreatic β-cell death in type 2 diabetes. The S20G substitution of hIAPP (hIAPP (S20G)) …
Molecular dynamics simulations of alanine rich β‐sheet oligomers: Insight into amyloid formation
B Ma, R Nussinov - Protein Science, 2002 - Wiley Online Library
The aggregation observed in protein conformational diseases is the outcome of significant
new β‐sheet structure not present in the native state. Peptide model systems have been …
new β‐sheet structure not present in the native state. Peptide model systems have been …
Determination of the Most Stable Packing of Peptides from Ribosomal S1 Protein, Protein Bgl2p, and Aβ Peptide in β-Layers During Molecular Dynamics Simulations
AV Glyakina, NK Balabaev, OV Galzitskaya - Computer Simulations of …, 2022 - Springer
Our task was to determine the most stable packing of peptides in β-layers to construct an
oligomer structure for fibril growth. The β-layers consisting of eight short peptides with the …
oligomer structure for fibril growth. The β-layers consisting of eight short peptides with the …
[HTML][HTML] Unfolding of the amyloid β-peptide central helix: mechanistic insights from molecular dynamics simulations
Alzheimer's disease (AD) pathogenesis is associated with formation of amyloid fibrils
caused by polymerization of the amyloid β-peptide (Aβ), which is a process that requires …
caused by polymerization of the amyloid β-peptide (Aβ), which is a process that requires …
Conformational distribution and α-helix to β-sheet transition of human amylin fragment dimer
Experiments suggested that the fibrillation of the 11–25 fragment (hIAPP (11–25)) of human
islet amyloid polypeptide (hIAPP or amylin) involves the formation of transient α-helical …
islet amyloid polypeptide (hIAPP or amylin) involves the formation of transient α-helical …
Effect of familial mutations on the interconversion of α-Helix to β-sheet structures in an amyloid-forming peptide: insight from umbrella sampling simulations
Understanding the initial events of aggregation of amyloid β monomers to form β-sheet rich
fibrils is useful for the development of therapeutics for Alzheimer's disease. In this context …
fibrils is useful for the development of therapeutics for Alzheimer's disease. In this context …
Molecular‐Dynamics Simulations for Amyloid β1–42 Monomer with D‐Aspartic Acid Residues Using Continuous Solvent
A Oda, K Kobayashi, O Takahashi - Chemistry & Biodiversity, 2010 - Wiley Online Library
Molecular‐dynamics simulations of amyloid‐β1–42 peptides including d‐aspartic acid
residues were performed, and their three‐dimensional structures were compared. The …
residues were performed, and their three‐dimensional structures were compared. The …
[PDF][PDF] Role of β-hairpin formation in aggregation: the self-assembly of the amyloid-β (25–35) peptide
L Larini, JE Shea - Biophysical journal, 2012 - cell.com
Abstract The amyloid-β (25–35) peptide plays a key role in the etiology of Alzheimer's
disease due to its extreme toxicity even in the absence of aging. Because of its high …
disease due to its extreme toxicity even in the absence of aging. Because of its high …