DNA methylation of developmental genes in pediatric medulloblastomas identified by denaturation analysis of methylation differences

SJ Diede, J Guenthoer, LN Geng… - Proceedings of the …, 2010 - National Acad Sciences
DNA methylation might have a significant role in preventing normal differentiation in
pediatric cancers. We used a genomewide method for detecting regions of CpG methylation …

Methylation of PTCH1, the Patched-1 gene, in a panel of primary medulloblastomas

JI Pritchard, JM Olson - Cancer genetics and cytogenetics, 2008 - Elsevier
The Sonic hedgehog (Shh) pathway is aberrantly activated in a subset of the most common
malignant pediatric brain tumor, medulloblastoma (MB). Shh pathway activity is measured …

Aberrant promoter methylation of previously unidentified target genes is a common abnormality in medulloblastomas–implications for tumor biology and potential …

MC Frühwald, MS O'Dorisio, Z Dai, SM Tanner… - Oncogene, 2001 - nature.com
Medulloblastomas exhibit an array of diverse cytogenetic abnormalities. To evaluate the
significance of epigenetic rather than genetic lesions in medulloblastomas and other …

Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer

SJ Diede, Z Yao, CC Keyes, AE Tyler, J Dey… - Epigenetics, 2013 - Taylor & Francis
Genetic and epigenetic alterations are essential for the initiation and progression of human
cancer. We previously reported that primary human medulloblastomas showed extensive …

Array-based profiling of reference-independent methylation status (aPRIMES) identifies frequent promoter methylation and consecutive downregulation of ZIC2 in …

S Pfister, C Schlaeger, F Mendrzyk… - Nucleic acids …, 2007 - academic.oup.com
Existing microarray-based approaches for screening of DNA methylation are hampered by a
number of shortcomings, such as the introduction of bias by DNA copy-number imbalances …

Genome-wide methylation profiling identifies novel methylated genes in neuroblastoma tumors

M Olsson, S Beck, P Kogner, T Martinsson, H Carén - Epigenetics, 2016 - Taylor & Francis
Neuroblastoma is a very heterogeneous tumor of childhood. The clinical spectra range from
very aggressive metastatic disease to spontaneous regression, even without therapy …

Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

V Hovestadt, DTW Jones, S Picelli, W Wang, M Kool… - Nature, 2014 - nature.com
Epigenetic alterations, that is, disruption of DNA methylation and chromatin architecture, are
now acknowledged as a universal feature of tumorigenesis. Medulloblastoma, a clinically …

[HTML][HTML] Characterization of DNA methylation and its association with other biological systems in lymphoblastoid cell lines

Z Zhang, J Liu, M Kaur, ID Krantz - Genomics, 2012 - Elsevier
Lymphoblastoid cell line (LCL) is a common tool to study genetic disorders. However, it has
not been fully characterized to what degree LCLs preserve the in vivo status of non-genetic …

[HTML][HTML] DNA methylation as a diagnostic tool

K Galbraith, M Snuderl - Acta Neuropathologica Communications, 2022 - Springer
DNA methylation of cytosines in CpG sites throughout the genome is an epigenetic mark
contributing to gene expression regulation. DNA methylation patterns are specific to tissue …

[HTML][HTML] Genome-wide demethylation during neural differentiation of P19 embryonal carcinoma cells

I Hatada, S Morita, M Kimura, T Horii… - Journal of human …, 2008 - nature.com
Epigenetic regulation including DNA methylation plays an important role in several
differentiation processes. We profiled global DNA methylation in the neural differentiation of …