Capturing genomic signatures of DNA sequence variation using a standard anonymous microarray platform
Comparative genomics, using the model organism approach, has provided powerful insights
into the structure and evolution of whole genomes. Unfortunately, only a small fraction of …
into the structure and evolution of whole genomes. Unfortunately, only a small fraction of …
[HTML][HTML] Comparing whole genomes using DNA microarrays
The rapid accumulation of complete genomic sequences offers the opportunity to carry out
an analysis of inter-and intra-individual genome variation within a species on a routine …
an analysis of inter-and intra-individual genome variation within a species on a routine …
[HTML][HTML] Extracting population genetics information from a diploid genome sequence
N Osada - Frontiers in Ecology and Evolution, 2014 - frontiersin.org
Due to advances in sequencing technologies, large-scale genomic research has become
feasible for many biologists who study organisms that are not traditionally used as model …
feasible for many biologists who study organisms that are not traditionally used as model …
DNA chip analysis in diverse organisms with unsequenced genomes
RN Nazar, P Chen, D Dean, J Robb - Molecular biotechnology, 2010 - Springer
Whether for basic research or biotechnology, DNA microarrays have become indispensable
tools for studying the transcriptome. Normally, analyses begin with a set of known cDNA …
tools for studying the transcriptome. Normally, analyses begin with a set of known cDNA …
A perfect match genomic landscape provides a unified framework for the precise detection of variation in natural and synthetic haploid genomes
K Palacios-Flores, J García-Sotelo, A Castillo… - Genetics, 2018 - academic.oup.com
At the heart of genomics lies the precise determination of an organism's DNA sequence.
Palacios-Flores et al. present a simple, sensitive, precise, and essentially non-statistical …
Palacios-Flores et al. present a simple, sensitive, precise, and essentially non-statistical …
A case for evolutionary genomics and the comprehensive examination of sequence biodiversity
Comparative analysis is one of the most powerful methods available for understanding the
diverse and complex systems found in biology, but it is often limited by a lack of …
diverse and complex systems found in biology, but it is often limited by a lack of …
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
We present a de novo assembly of a eukaryote transcriptome using 454 pyrosequencing
data. The Glanville fritillary butterfly (Melitaea cinxia; Lepidoptera: Nymphalidae) is a …
data. The Glanville fritillary butterfly (Melitaea cinxia; Lepidoptera: Nymphalidae) is a …
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms
KH Cheung, J Hager, D Pan, R Srivastava… - Nucleic acids …, 2004 - academic.oup.com
We have developed a universal web server application (KARMA) that allows comparison
and annotation of user-defined pairs of microarray platforms based on diverse types of …
and annotation of user-defined pairs of microarray platforms based on diverse types of …
Diversity arrays: a solid state technology for sequence information independent genotyping
D Jaccoud, K Peng, D Feinstein… - Nucleic acids research, 2001 - academic.oup.com
Here we present the successful application of the microarray technology platform to the
analysis of DNA polymorphisms. Using the rice genome as a model, we demonstrate the …
analysis of DNA polymorphisms. Using the rice genome as a model, we demonstrate the …
Galaxy tools to study genome diversity
Background Intra-species genetic variation can be used to investigate population structure,
selection, and gene flow in non-model vertebrates; and due to the plummeting costs for …
selection, and gene flow in non-model vertebrates; and due to the plummeting costs for …