Biologically informed deep neural network for prostate cancer discovery

HA Elmarakeby, J Hwang, R Arafeh, J Crowdis, S Gang… - Nature, 2021 - nature.com
The determination of molecular features that mediate clinically aggressive phenotypes in
prostate cancer remains a major biological and clinical challenge,. Recent advances in …

Deep learning in cancer diagnosis, prognosis and treatment selection

KA Tran, O Kondrashova, A Bradley, ED Williams… - Genome Medicine, 2021 - Springer
Deep learning is a subdiscipline of artificial intelligence that uses a machine learning
technique called artificial neural networks to extract patterns and make predictions from …

The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications

VR Ramnarine, M Alshalalfa, F Mo, N Nabavi… - …, 2018 - academic.oup.com
Background Treatment-induced neuroendocrine prostate cancer (tNEPC) is an aggressive
variant of late-stage metastatic castrate-resistant prostate cancer that commonly arises …

Prostate cancer therapy personalization via multi-modal deep learning on randomized phase III clinical trials

A Esteva, J Feng, D van der Wal, SC Huang… - NPJ digital …, 2022 - nature.com
Prostate cancer is the most frequent cancer in men and a leading cause of cancer death.
Determining a patient's optimal therapy is a challenge, where oncologists must select a …

[PDF][PDF] A deep learning framework for predicting response to therapy in cancer

T Sakellaropoulos, K Vougas, S Narang, F Koinis… - Cell reports, 2019 - cell.com
A major challenge in cancer treatment is predicting clinical response to anti-cancer drugs on
a personalized basis. Using a pharmacogenomics database of 1,001 cancer cell lines, we …

Predicting drug response of tumors from integrated genomic profiles by deep neural networks

YC Chiu, HIH Chen, T Zhang, S Zhang, A Gorthi… - BMC medical …, 2019 - Springer
Background The study of high-throughput genomic profiles from a pharmacogenomics
viewpoint has provided unprecedented insights into the oncogenic features modulating drug …

Systemic surfaceome profiling identifies target antigens for immune-based therapy in subtypes of advanced prostate cancer

JK Lee, NJ Bangayan, T Chai… - Proceedings of the …, 2018 - National Acad Sciences
Prostate cancer is a heterogeneous disease composed of divergent molecular and
histologic subtypes, including prostate adenocarcinoma (PrAd) and neuroendocrine …

A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance

JM Arriaga, S Panja, M Alshalalfa, J Zhao, M Zou… - Nature Cancer, 2020 - nature.com
Understanding the intricacies of lethal prostate cancer poses specific challenges due to
difficulties in accurate modeling of metastasis in vivo. Here we show that NPK EYFP mice …

Patient-specific Boolean models of signalling networks guide personalised treatments

A Montagud, J Béal, L Tobalina, P Traynard… - Elife, 2022 - elifesciences.org
Prostate cancer is the second most occurring cancer in men worldwide. To better
understand the mechanisms of tumorigenesis and possible treatment responses, we …

High-accuracy prostate cancer pathology using deep learning

Y Tolkach, T Dohmgörgen, M Toma… - Nature Machine …, 2020 - nature.com
Deep learning (DL) is a powerful methodology for the recognition and classification of tissue
structures in digital pathology. Its performance in prostate cancer pathology is still under …