[PDF][PDF] A second divalent metal ion in the group II intron reaction center

PM Gordon, R Fong, JA Piccirilli - Chemistry & biology, 2007 - cell.com
Group II introns are mobile genetic elements that have been implicated as agents of genetic
diversity, and serve as important model systems for investigating RNA catalysis and pre …

Structural requirement for Mg2+ binding in the group I intron core

P Rangan, SA Woodson - Journal of molecular biology, 2003 - Elsevier
Divalent metal ions are required for splicing of group I introns, but their role in maintaining
the structure of the active site is still under investigation. Ribonuclease and hydroxyl radical …

Unexpected metal ion requirements specific for catalysis of the branching reaction in a group II intron

E Dème, A Nolte, A Jacquier - Biochemistry, 1999 - ACS Publications
The splicing process catalyzed by group II intron ribozymes follows the same two-step
pathway as nuclear pre-mRNA splicing. In vivo, the first splicing step of wild-type introns is a …

The ribozyme core of group II introns: a structure in want of partners

F Michel, M Costa, E Westhof - Trends in biochemical sciences, 2009 - cell.com
Group II introns contain a large ribozyme, which catalyzes self-splicing, and the coding
sequence of a reverse transcriptase, the function of which is to cooperate with the ribozyme …

Metal ion binding sites in a group II intron core

RKO Sigel, A Vaidya, AM Pyle - Nature structural biology, 2000 - nature.com
Group II introns are catalytic RNA molecules that require divalent metal ions for folding,
substrate binding, and chemical catalysis. Metal ion binding sites in the group II core have …

RNA splicing: group I intron crystal structures reveal the basis of splice site selection and metal ion catalysis

MR Stahley, SA Strobel - Current opinion in structural biology, 2006 - Elsevier
The group I intron has served as a model for RNA catalysis since its discovery 25 years ago.
Four recently determined high-resolution crystal structures complement extensive …

Conformation of the Group II intron branch site in solution

JC Schlatterer, SH Crayton… - Journal of the American …, 2006 - ACS Publications
Group II introns are multidomain ribozymes that catalyze their own removal from pre-mRNA.
The nucleophile for the first cleavage step is the 2 'OH of a specific adenosine within domain …

Divalent metal ion binding to a conserved wobble pair defining the upstream site of cleavage of group I self-splicing introns

FHT Allain, G Varani - Nucleic acids research, 1995 - academic.oup.com
The upstream site of cleavage of all group I self-splicing introns is identified by an absolutely
conserved U· G base pair. Although a wobble C· A pair can substitute the U· G pair, all other …

Catalytic reaction mechanisms and structural features of group II intron ribozymes

AM Pyle - Catalytic RNA, 1996 - Springer
Splicing of group II introns is essential for the metabolism of many organisms (Michel et al.
1989; Michel and Ferat 1995). These ubiquitous introns play a critical role in the processing …

[HTML][HTML] Visualizing group II intron catalysis through the stages of splicing

M Marcia, AM Pyle - Cell, 2012 - cell.com
Group II introns are self-splicing ribozymes that share a reaction mechanism and a common
ancestor with the eukaryotic spliceosome, thereby providing a model system for …