Case study: the role of mechanistic network models in systems toxicology
J Hoeng, M Talikka, F Martin, A Sewer, X Yang… - Drug Discovery …, 2014 - Elsevier
Highlights•Biological network models enable a mechanistic understanding of high-
throughput data.•Network response can be quantified for the impact of a given stimulus.•The …
throughput data.•Network response can be quantified for the impact of a given stimulus.•The …
[HTML][HTML] Quantitative assessment of biological impact using transcriptomic data and mechanistic network models
TM Thomson, A Sewer, F Martin, V Belcastro… - Toxicology and applied …, 2013 - Elsevier
Exposure to biologically active substances such as therapeutic drugs or environmental
toxicants can impact biological systems at various levels, affecting individual molecules …
toxicants can impact biological systems at various levels, affecting individual molecules …
Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models
F Martin, A Sewer, M Talikka, Y Xiang, J Hoeng… - BMC …, 2014 - Springer
Background High-throughput measurement technologies such as microarrays provide
complex datasets reflecting mechanisms perturbed in an experiment, typically a treatment …
complex datasets reflecting mechanisms perturbed in an experiment, typically a treatment …
Systems toxicology: real world applications and opportunities
Systems Toxicology aims to change the basis of how adverse biological effects of
xenobiotics are characterized from empirical end points to describing modes of action as …
xenobiotics are characterized from empirical end points to describing modes of action as …
Applicability of computational systems biology in toxicology
K Kongsbak, N Hadrup, K Audouze… - Basic & clinical …, 2014 - Wiley Online Library
Abstract Systems biology as a research field has emerged within the last few decades.
Systems biology, often defined as the antithesis of the reductionist approach, integrates …
Systems biology, often defined as the antithesis of the reductionist approach, integrates …
[HTML][HTML] Network and pathway analysis of toxicogenomics data
G Barel, R Herwig - Frontiers in Genetics, 2018 - frontiersin.org
Toxicogenomics is the study of the molecular effects of chemical, biological and physical
agents in biological systems, with the aim of elucidating toxicological mechanisms, building …
agents in biological systems, with the aim of elucidating toxicological mechanisms, building …
The impact of network biology in pharmacology and toxicology
G Panagiotou, O Taboureau - SAR and QSAR in Environmental …, 2012 - Taylor & Francis
With the need to investigate alternative approaches and emerging technologies in order to
increase drug efficacy and reduce adverse drug effects, network biology offers a novel way …
increase drug efficacy and reduce adverse drug effects, network biology offers a novel way …
Systems toxicology: from basic research to risk assessment
Systems Toxicology is the integration of classical toxicology with quantitative analysis of
large networks of molecular and functional changes occurring across multiple levels of …
large networks of molecular and functional changes occurring across multiple levels of …
Cause-effect relationships in medicine: a protein network perspective
AF Fliri, WT Loging, RA Volkmann - Trends in pharmacological sciences, 2010 - cell.com
Current target-based drug discovery platforms are not able to predict drug efficacy and the
full spectrum of drug effects in organisms. Hence, many experimental drugs do not survive …
full spectrum of drug effects in organisms. Hence, many experimental drugs do not survive …
Computational systems biology and dose-response modeling in relation to new directions in toxicity testing
The new paradigm envisioned for toxicity testing in the 21st century advocates shifting from
the current animal-based testing process to a combination of in vitro cell-based studies, high …
the current animal-based testing process to a combination of in vitro cell-based studies, high …