The nature of systems biology

FJ Bruggeman, HV Westerhoff - TRENDS in Microbiology, 2007 - cell.com
The advent of functional genomics has enabled the molecular biosciences to come a long
way towards characterizing the molecular constituents of life. Yet, the challenge for biology …

Systems biology: toward system-level understanding of biological systems

H Kitano - 2001 - direct.mit.edu
Systems biology is a new field in biology that aims at system-level understanding of
biological systems. While molecular biology has led to remarkable progress in our …

[HTML][HTML] Systems biology: its practice and challenges

A Aderem - Cell, 2005 - cell.com
Systems biology is a comprehensive quantitative analysis of the manner in which all the
components of a biological system interact functionally over time. Such an analysis is …

The evolution of molecular biology into systems biology

HV Westerhoff, BO Palsson - Nature biotechnology, 2004 - nature.com
Abstract Systems analysis has historically been performed in many areas of biology,
including ecology, developmental biology and immunology. More recently, the genomics …

Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology

H Kitano - Current genetics, 2002 - Springer
With the ever-increasing flow of high-throughput gene expression, protein interaction and
genome sequence data, researchers gradually approach a system-level understanding of …

Metabolic engineering in the-omics era: elucidating and modulating regulatory networks

GN Vemuri, AA Aristidou - Microbiology and Molecular Biology …, 2005 - Am Soc Microbiol
The importance of regulatory control in metabolic processes is widely acknowledged, and
several enquiries (both local and global) are being made in understanding regulation at …

[HTML][HTML] A unifying view of 21st century systems biology

M Vidal - FEBS letters, 2009 - Elsevier
The idea that multi-scale dynamic complex systems formed by interacting macromolecules
and metabolites, cells, organs and organisms underlie some of the most fundamental …

Molecular eco-systems biology: towards an understanding of community function

J Raes, P Bork - Nature Reviews Microbiology, 2008 - nature.com
Abstract Systems-biology approaches, which are driven by genome sequencing and high-
throughput functional genomics data, are revolutionizing single-cell-organism biology. With …

Local barriers configure systemic communications between the host and microbiota

Q Lu, TS Stappenbeck - Science, 2022 - science.org
Associations between the dynamic community of microbes (the microbiota) and the host they
colonize appear to be vital for ensuring host health. Microbe-host communication is actively …

[HTML][HTML] Functional biology in its natural context: A search for emergent simplicity

J Bergelson, M Kreitman, DA Petrov, A Sanchez… - Elife, 2021 - elifesciences.org
The immeasurable complexity at every level of biological organization creates a daunting
task for understanding biological function. Here, we highlight the risks of stripping it away at …