Computational analysis of amino acid mutation: a proteome wide perspective
J Chen, B Shen - Current Proteomics, 2009 - ingentaconnect.com
Amino acid mutations may have diverse effects on protein structure and function. Thus
reliable information about the protein sequence variations is essential to gain insights into …
reliable information about the protein sequence variations is essential to gain insights into …
[HTML][HTML] Predicting the functional effect of amino acid substitutions and indels
As next-generation sequencing projects generate massive genome-wide sequence
variation data, bioinformatics tools are being developed to provide computational …
variation data, bioinformatics tools are being developed to provide computational …
Computational approaches to study the effects of small genomic variations
K Khafizov, MV Ivanov, OV Glazova… - Journal of molecular …, 2015 - Springer
Advances in DNA sequencing technologies have led to an avalanche-like increase in the
number of gene sequences deposited in public databases over the last decade as well as …
number of gene sequences deposited in public databases over the last decade as well as …
[HTML][HTML] Correlated mutations: a hallmark of phenotypic amino acid substitutions
A Kowarsch, A Fuchs, D Frishman… - PLoS computational …, 2010 - journals.plos.org
Point mutations resulting in the substitution of a single amino acid can cause severe
functional consequences, but can also be completely harmless. Understanding what …
functional consequences, but can also be completely harmless. Understanding what …
[HTML][HTML] Amino acid changes in disease-associated variants differ radically from variants observed in the 1000 genomes project dataset
The 1000 Genomes Project data provides a natural background dataset for amino acid
germline mutations in humans. Since the direction of mutation is known, the amino acid …
germline mutations in humans. Since the direction of mutation is known, the amino acid …
[HTML][HTML] Comparative analysis of web-based programs for single amino acid substitutions in proteins
Single amino-acid substitution in a protein affects its structure and function. These changes
are the primary reasons for the advent of many complex diseases. Analyzing single point …
are the primary reasons for the advent of many complex diseases. Analyzing single point …
Prediction of pathological mutations in proteins: the challenge of integrating sequence conservation and structure stability principles
The recent drop in genome sequencing costs has created a promising horizon for the
development of genomic medicine. Within the biomedical environment, sequencing data are …
development of genomic medicine. Within the biomedical environment, sequencing data are …
[HTML][HTML] The loss and gain of functional amino acid residues is a common mechanism causing human inherited disease
J Lugo-Martinez, V Pejaver, KA Pagel… - PLoS computational …, 2016 - journals.plos.org
Elucidating the precise molecular events altered by disease-causing genetic variants
represents a major challenge in translational bioinformatics. To this end, many studies have …
represents a major challenge in translational bioinformatics. To this end, many studies have …
Annotating mutational effects on proteins and protein interactions: designing novel and revisiting existing protocols
In this review we describe a protocol to annotate the effects of missense mutations on
proteins, their functions, stability, and binding. For this purpose we present a collection of the …
proteins, their functions, stability, and binding. For this purpose we present a collection of the …
Use of estimated evolutionary strength at the codon level improves the prediction of disease‐related protein mutations in humans
Predicting the functional impact of protein variation is one of the most challenging problems
in bioinformatics. A rapidly growing number of genome‐scale studies provide large amounts …
in bioinformatics. A rapidly growing number of genome‐scale studies provide large amounts …