Genome-wide chromatin accessibility analysis unveils open chromatin convergent evolution during polyploidization in cotton
J Han, D Lopez-Arredondo, G Yu… - Proceedings of the …, 2022 - National Acad Sciences
Allopolyploidization, resulting in divergent genomes in the same cell, is believed to trigger a
“genome shock”, leading to broad genetic and epigenetic changes. However, little is …
“genome shock”, leading to broad genetic and epigenetic changes. However, little is …
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing
JT Page, MD Huynh, ZS Liechty, K Grupp… - G3: Genes …, 2013 - academic.oup.com
Understanding the composition, evolution, and function of the Gossypium hirsutum (cotton)
genome is complicated by the joint presence of two genomes in its nucleus (AT and DT …
genome is complicated by the joint presence of two genomes in its nucleus (AT and DT …
Dynamic 3D genome architecture of cotton fiber reveals subgenome-coordinated chromatin topology for 4-staged single-cell differentiation
L Pei, X Huang, Z Liu, X Tian, J You, J Li, DD Fang… - Genome Biology, 2022 - Springer
Background Despite remarkable advances in our knowledge of epigenetically mediated
transcriptional programming of cell differentiation in plants, little is known about chromatin …
transcriptional programming of cell differentiation in plants, little is known about chromatin …
Homoeolog expression bias and expression level dominance in allopolyploid cotton
Allopolyploidy is an evolutionary and mechanistically intriguing process, in that it entails the
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …
[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)
Polyploidy plays a major role in genome evolution, which corresponds to environmental
changes over millions of years. The mechanisms of genome evolution, particularly during …
changes over millions of years. The mechanisms of genome evolution, particularly during …
Histone modifications define expression bias of homoeologous genomes in allotetraploid cotton
D Zheng, W Ye, Q Song, F Han, T Zhang… - Plant …, 2016 - academic.oup.com
Histone modifications regulate gene expression in eukaryotes, but their roles in gene
expression changes in interspecific hybrids or allotetraploids are poorly understood. Histone …
expression changes in interspecific hybrids or allotetraploids are poorly understood. Histone …
Evolutionary dynamics of 3D genome architecture following polyploidization in cotton
The formation of polyploids significantly increases the complexity of transcriptional
regulation, which is expected to be reflected in sophisticated higher-order chromatin …
regulation, which is expected to be reflected in sophisticated higher-order chromatin …
Gene-expression novelty in allopolyploid cotton: a proteomic perspective
Allopolyploidization is accompanied by changes in gene expression that are thought to
contribute to phenotypic diversification. Here we describe global changes in the single …
contribute to phenotypic diversification. Here we describe global changes in the single …
Duplicate gene expression in allopolyploid Gossypiumreveals two temporally distinct phases of expression evolution
Background Polyploidy has played a prominent role in shaping the genomic architecture of
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …
Genomically biased accumulation of seed storage proteins in allopolyploid cotton
Allopolyploidy is an important process during plant evolution that results in the reunion of
two divergent genomes into a common nucleus. Many of the immediate as well as longer …
two divergent genomes into a common nucleus. Many of the immediate as well as longer …