Uncovering genomic and transcriptional variations facilitates utilization of wild resources in cotton disease resistance improvement

Y Zhang, Y Zhang, C Gao, Z Zhang, Y Yuan… - Theoretical and Applied …, 2023 - Springer
Background Upland cotton wild/landraces represent a valuable resource for disease
resistance alleles. Genetic differentiation between genotypes, as well as variation in …

The comparative transcriptome and co-expression of hub genes analysis for fiber development in RIL populations of upland cotton

R Wei, Y Zhong, N Xu, P Li, MT Azhar, Z Yang… - Industrial Crops and …, 2024 - Elsevier
Upland cotton (Gossypium hirsutum) is one of the important crops to produce natural fiber,
and fiber length (FL) and fiber strength (FS) are important fiber quality traits. In this study, we …

[HTML][HTML] GhSOC1s evolve to respond differently to the environmental cues and promote flowering in partially independent ways

L Ma, Y Yan - Frontiers in Plant Science, 2022 - frontiersin.org
Gossypium hirsutum is most broadly cultivated in the world due to its broader adaptation to
the environment and successful breeding of early maturity varieties. However, how cotton …

[HTML][HTML] Identification of new cotton fiber-quality QTL by multiple genomic analyses and development of markers for genomic breeding

H Tan, B Tang, M Sun, Q Yin, Y Ma, J Li, P Wang, Z Li… - The Crop Journal, 2024 - Elsevier
Cotton fiber is one of the main raw materials for the textile industry. In recent years, many
cotton fiber quality QTL have been identified, but few were applied in breeding. In this study …

[HTML][HTML] From tetraploid to diploid, a pangenomic approach to identify genes lost during synthetic diploidization of Eragrostis curvula

J Carballo, AM Bellido, JP Selva… - Frontiers in Plant …, 2023 - frontiersin.org
Introduction In Eragrostis curvula, commonly known as weeping lovegrass, a synthetic
diploidization event of the facultative apomictic tetraploid Tanganyika INTA cv. originated …

Pan-genome of Citrullus genus highlights the extent of presence/absence variation during domestication and selection

Y Sun, DR Kou, Y Li, JP Ni, J Wang, YM Zhang… - BMC genomics, 2023 - Springer
The rich genetic diversity in Citrullus lanatus and the other six species in the Citrullus genus
provides important sources in watermelon breeding. Here, we present the Citrullus genus …

Genome and pan-genome assembly of asparagus bean (Vigna unguiculata ssp. sesquipedialis) reveal the genetic basis of cold adaptation

L Liang, J Zhang, J Xiao, X Li, Y Xie, H Tan… - Frontiers in Plant …, 2022 - frontiersin.org
Asparagus bean (Vigna unguiculata ssp. sesquipedialis) is an important cowpea
subspecies. We assembled the genomes of Ningjiang 3 (NJ, 550.31 Mb) and Dubai bean …

Insights into the Transcriptomics of Crop Wild Relatives to Unravel the Salinity Stress Adaptive Mechanisms

M Abdul Aziz, K Masmoudi - International journal of molecular sciences, 2023 - mdpi.com
The narrow genomic diversity of modern cultivars is a major bottleneck for enhancing the
crop's salinity stress tolerance. The close relatives of modern cultivated plants, crop wild …

[HTML][HTML] Genomic and epigenomic insights into the mechanism of cold response in upland cotton (Gossypium hirsutum)

J Wang, Z Gong, J Zheng, Z Li, G Zhou, Y Xu… - Plant Physiology and …, 2024 - Elsevier
Functional genome research, including gene transcriptional and posttranslational
modifications of histones, can benefit greatly from a high-quality genome assembly. Histone …

Identification of heat-tolerant genes in non-reference sequences in rice by integrating pan-genome, transcriptomics, and QTLs

ST Woldegiorgis, T Wu, L Gao, Y Huang, Y Zheng… - Genes, 2022 - mdpi.com
The availability of large-scale genomic data resources makes it very convenient to mine and
analyze genes that are related to important agricultural traits in rice. Pan-genomes have …