[HTML][HTML] PPanG: a precision pangenome browser enabling nucleotide-level analysis of genomic variations in individual genomes and their graph-based pangenome

M Liu, F Zhang, H Lu, H Xue, X Dong, Z Li, J Xu… - BMC genomics, 2024 - Springer
Graph-based pangenome is gaining more popularity than linear pangenome because it
stores more comprehensive information of variations. However, traditional linear genome …

Integrating advancements in root phenotyping and genome‐wide association studies to open the root genetics gateway

M Abbas, MA Abid, Z Meng, M Abbas… - Physiologia …, 2022 - Wiley Online Library
Plant adaptation to challenging environmental conditions around the world has made root
growth and development an important research area for plant breeders and scientists …

A haplotype‐resolved genome for Rhododendron×pulchrum and the expression analysis of heat shock genes

JS Shen, L Lan, SL Kan, HF Cheng… - … of Systematics and …, 2023 - Wiley Online Library
Rhododendron is the largest genus in Ericaceae and is well known for its diversity and
beauty of flowers present in different species, making it a much‐revered lineage of …

Structural variations in crocodile lizard populations provide novel insights into genomic variations in endangered animals

L Xiong, Z Zhou, Y Song, S Huang, Z Li… - Molecular …, 2023 - Wiley Online Library
Population‐scale genome resequencing of endangered animals may contribute to gaining
an understanding of how genomes vary as population sizes become smaller, as well as the …

Pangenomic exploration of Theobroma cacao: New Insights into Gene Content Diversity and Selection During Domestication

X Argout, G Droc, O Fouet, M Rouard, K Labadie… - bioRxiv, 2023 - biorxiv.org
Abstract The Cacao tree (Theobroma cacao L.) is a major cash crop and an important
source of income for millions of farmers across Africa, Asia and Latin America. However …

[HTML][HTML] Fingerprint Finder: Identifying Genomic Fingerprint Sites in Cotton Cohorts for Genetic Analysis and Breeding Advancement

S Liu, H Cheng, Y Zhang, M He, D Zuo, Q Wang, L Lv… - Genes, 2024 - mdpi.com
Genomic data in Gossypium provide numerous data resources for the cotton genomics
community. However, to fill the gap between genomic analysis and breeding field work …

[HTML][HTML] Characterization of Expression and Epigenetic Features of Core Genes in Common Wheat

D Zheng, W Zhang - Genes, 2022 - mdpi.com
The availability of multiple wheat genome sequences enables us to identify core genes and
characterize their genetic and epigenetic features, thereby advancing our understanding of …

[HTML][HTML] Graph pangenomes track genetic variants for crop improvement

A Hameed, P Poznanski, A Nadolska-Orczyk… - International Journal of …, 2022 - mdpi.com
Global climate change and the urgency to transform crops require an exhaustive genetic
evaluation. The large polyploid genomes of food crops, such as cereals, make it difficult to …

Examining population structure across multiple collections of Cannabis

A Halpin-McCormick, K Heyduk, MB Kantar… - Genetic Resources and …, 2024 - Springer
Population structure of Cannabis sativa L. was explored across nine independent
collections that each contained a unique sampling of varieties. Hierarchical Clustering of …

大豆泛基因组研究进展

刘羽诚, 申妍婷, 田志喜 - 遗传, 2024 - chinagene.cn
人工驯化为农业发展提供了原始驱动力, 也深刻地改变了许多动植物的遗传背景.
伴随组学大数据理论和技术体系的发展, 作物基因组研究已迈入泛基因组时代 …