The structure, function, and evolution of plant centromeres

M Naish, IR Henderson - Genome Research, 2024 - genome.cshlp.org
Centromeres are essential regions of eukaryotic chromosomes responsible for the formation
of kinetochore complexes, which connect to spindle microtubules during cell division …

[PDF][PDF] Ribosome profiling reveals the translational landscape and allele-specific translational efficiency in rice

XT Zhu, R Zhou, J Che, YY Zheng, MT ul Qamar… - Plant …, 2023 - cell.com
Translational regulation is a critical step in the process of gene expression and governs the
synthesis of proteins from mRNAs. Many studies have revealed translational regulation in …

[HTML][HTML] The legacies of the “Father of Hybrid Rice” and the seven representative achievements of Chinese rice research: A pioneering perspective towards …

JG Gao, XG Zhu - Frontiers in Plant Science, 2023 - frontiersin.org
The “Father of Hybrid Rice”, Yuan Longping, created high-yield hybrid rice that can feed tens
of millions of people annually. The research achievements of Yuan and his team on low …

[HTML][HTML] Comparative analysis of genome sequences of the two cultivated tetraploid cottons, Gossypium hirsutum (L.) and G. barbadense (L.)

Q Meng, J Gu, Z Xu, J Zhang, J Tang, A Wang… - Industrial Crops and …, 2023 - Elsevier
With innovations in sequencing technology and the progress of high-performance
computing systems, it is now relatively straightforward to sequence and assemble complex …

New algorithms for accurate and efficient de novo genome assembly from long DNA sequencing reads

L Gonzalez-Garcia… - Life Science …, 2023 - life-science-alliance.org
Building de novo genome assemblies for complex genomes is possible thanks to long-read
DNA sequencing technologies. However, maximizing the quality of assemblies based on …

[HTML][HTML] Haplotype analysis and marker development of five salt-tolerant–related genes in rice (Oryza sativa L.)

P Li, Z Li, X Liu, H Zhang, S Zhang, F Liu, N Li… - Frontiers in Plant …, 2023 - frontiersin.org
Salinity stress is a great threat to the growth and productivity of crops, and development of
salt-tolerant crops is of great necessity to ensure food security. Although a few genes with …

Smart breeding driven by advances in sequencing technology

C Zhang, S Jiang, Y Tian, X Dong, J Xiao… - Modern …, 2023 - Wiley Online Library
Crop breeding has undergone numerous advancements throughout history with the next
revolution being uncertain. This review provides an overview of breeding techniques from …

[HTML][HTML] Three near-complete genome assemblies reveal substantial centromere dynamics from diploid to tetraploid in Brachypodium genus

C Chen, S Wu, Y Sun, J Zhou, Y Chen, J Zhang… - Genome Biology, 2024 - Springer
Background Centromeres are critical for maintaining genomic stability in eukaryotes, and
their turnover shapes genome architectures and drives karyotype evolution. However, the co …

[HTML][HTML] De novo assembly of two chromosome-level rice genomes and bin-based QTL mapping reveal genetic diversity of grain weight trait in rice

W Kong, X Deng, Z Liao, Y Wang, M Zhou… - Frontiers in Plant …, 2022 - frontiersin.org
Following the “green revolution,” indica and japonica hybrid breeding has been recognized
as a new breakthrough in further improving rice yields. However, heterosis-related grain …

[HTML][HTML] A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset

Y Zhou, N Kathiresan, Z Yu, LF Rivera, Y Yang… - BMC biology, 2024 - Springer
Abstract Background Single-nucleotide polymorphisms (SNPs) are the most widely used
form of molecular genetic variation studies. As reference genomes and resequencing data …